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## Hierarchy For All Packages

Package Hierarchies:
  cc.mallet.classify, cc.mallet.classify.evaluate, cc.mallet.classify.examples, cc.mallet.classify.tests, cc.mallet.classify.tui, cc.mallet.cluster, cc.mallet.cluster.clustering_scorer, cc.mallet.cluster.evaluate, cc.mallet.cluster.evaluate.tests, cc.mallet.cluster.examples, cc.mallet.cluster.iterator, cc.mallet.cluster.iterator.tests, cc.mallet.cluster.neighbor_evaluator, cc.mallet.cluster.tui, cc.mallet.cluster.util, cc.mallet.examples, cc.mallet.extract, cc.mallet.extract.pipe, cc.mallet.extract.test, cc.mallet.fst, cc.mallet.fst.confidence, cc.mallet.fst.semi_supervised, cc.mallet.fst.tests, cc.mallet.grmm.examples, cc.mallet.grmm.inference, cc.mallet.grmm.inference.gbp, cc.mallet.grmm.learning, cc.mallet.grmm.learning.extract, cc.mallet.grmm.learning.templates, cc.mallet.grmm.test, cc.mallet.grmm.types, cc.mallet.grmm.util, cc.mallet.optimize, cc.mallet.optimize.tests, cc.mallet.pipe, cc.mallet.pipe.iterator, cc.mallet.pipe.iterator.tests, cc.mallet.pipe.tests, cc.mallet.pipe.tsf, cc.mallet.pipe.tsf.tests, cc.mallet.share.casutton.ner, cc.mallet.share.mccallum.ner, cc.mallet.share.upenn, cc.mallet.share.upenn.ner, cc.mallet.share.weili.ner, cc.mallet.share.weili.ner.enron, cc.mallet.topics, cc.mallet.topics.tui, cc.mallet.types, cc.mallet.types.tests, cc.mallet.util, cc.mallet.util.resources.wn, cc.mallet.util.search, cc.mallet.util.tests

## Class Hierarchy

- java.lang.Object
  - cc.mallet.grmm.inference.AbstractBeliefPropagation.AbstractMessageStrategy (implements cc.mallet.grmm.inference.AbstractBeliefPropagation.MessageStrategy)
    - cc.mallet.grmm.inference.AbstractBeliefPropagation.MaxProductMessageStrategy (implements java.io.Serializable)
    - cc.mallet.grmm.inference.AbstractBeliefPropagation.SumProductMessageStrategy (implements java.io.Serializable)
  - java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    - java.util.AbstractList<E> (implements java.util.List<E>)
      - java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        - cc.mallet.types.ArrayListSequence<E> (implements cc.mallet.types.Sequence<E>)
          - cc.mallet.extract.LabeledSpans
        - cc.mallet.types.InstanceList (implements cc.mallet.types.AlphabetCarrying, java.lang.Iterable<T>, java.io.Serializable)
          - cc.mallet.types.MultiInstanceList
          - cc.mallet.types.PagedInstanceList
        - cc.mallet.types.TokenSequence (implements cc.mallet.types.Sequence<E>, java.io.Serializable)
          - cc.mallet.extract.StringTokenization (implements cc.mallet.extract.Tokenization)
        - cc.mallet.classify.Trial
    - java.util.AbstractSet<E> (implements java.util.Set<E>)
      - cc.mallet.grmm.types.BitVarSet (implements cc.mallet.grmm.types.VarSet)
      - cc.mallet.grmm.types.ListVarSet (implements java.io.Serializable, cc.mallet.grmm.types.VarSet)
  - cc.mallet.grmm.types.AbstractFactor (implements cc.mallet.grmm.types.Factor)
    - cc.mallet.grmm.types.Assignment (implements java.io.Serializable)
      - cc.mallet.grmm.util.LabelsAssignment
    - cc.mallet.grmm.types.BetaFactor
    - cc.mallet.grmm.types.BinaryUnaryFactor (implements cc.mallet.grmm.types.ParameterizedFactor)
    - cc.mallet.grmm.types.BoltzmannPairFactor (implements cc.mallet.grmm.types.ParameterizedFactor)
    - cc.mallet.grmm.types.BoltzmannUnaryFactor (implements cc.mallet.grmm.types.ParameterizedFactor)
    - cc.mallet.grmm.types.ConstantFactor
    - cc.mallet.grmm.types.NormalFactor
    - cc.mallet.grmm.types.PottsTableFactor (implements cc.mallet.grmm.types.ParameterizedFactor)
    - cc.mallet.grmm.types.SkeletonFactor
    - cc.mallet.grmm.types.UniformFactor
    - cc.mallet.grmm.types.UniNormalFactor
  - cc.mallet.grmm.inference.AbstractInferencer (implements java.lang.Cloneable, cc.mallet.grmm.inference.Inferencer)
    - cc.mallet.grmm.inference.AbstractBeliefPropagation
      - cc.mallet.grmm.inference.LoopyBP
      - cc.mallet.grmm.inference.ResidualBP
      - cc.mallet.grmm.inference.TreeBP
      - cc.mallet.grmm.inference.TRP
    - cc.mallet.grmm.inference.BruteForceInferencer (implements cc.mallet.grmm.inference.Inferencer)
    - cc.mallet.grmm.inference.JunctionTreeInferencer
    - cc.mallet.grmm.inference.gbp.ParentChildGBP
    - cc.mallet.grmm.inference.SamplingInferencer
    - cc.mallet.grmm.inference.VariableElimination
  - java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    - java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      - java.util.LinkedHashMap<K,V> (implements java.util.Map<K,V>)
        - cc.mallet.types.StringKernel
    - cc.mallet.grmm.util.THashMultiMap
  - cc.mallet.grmm.inference.gbp.AbstractMessageStrategy (implements cc.mallet.grmm.inference.gbp.MessageStrategy)
    - cc.mallet.grmm.inference.gbp.FullMessageStrategy
    - cc.mallet.grmm.inference.gbp.SparseMessageSender
  - cc.mallet.grmm.types.AbstractTableFactor (implements cc.mallet.grmm.types.DiscreteFactor)
    - cc.mallet.grmm.types.LogTableFactor
    - cc.mallet.grmm.types.TableFactor
  - cc.mallet.classify.evaluate.AccuracyCoverage (implements java.awt.event.ActionListener)
  - cc.mallet.classify.evaluate.AccuracyCoverage.ClassificationComparator (implements java.util.Comparator<T>)
  - cc.mallet.extract.AccuracyCoverageEvaluator (implements cc.mallet.extract.ExtractionEvaluator)
  - cc.mallet.grmm.learning.ACRF (implements java.io.Serializable)
  - cc.mallet.grmm.learning.ACRF.MaximizableACRF (implements cc.mallet.optimize.Optimizable.ByGradientValue, java.io.Serializable)
  - cc.mallet.grmm.learning.ACRF.Template (implements java.io.Serializable)
    - cc.mallet.grmm.learning.ACRF.FixedFactorTemplate
    - cc.mallet.grmm.learning.ACRF.SequenceTemplate
      - cc.mallet.grmm.learning.ACRF.BigramTemplate
      - cc.mallet.grmm.learning.ACRF.PairwiseFactorTemplate
      - cc.mallet.grmm.learning.ACRF.UnigramTemplate
      - cc.mallet.grmm.examples.CrossTemplate1
      - cc.mallet.grmm.learning.templates.SimilarTokensTemplate
  - cc.mallet.grmm.learning.ACRFEvaluator
    - cc.mallet.grmm.learning.AcrfSerialEvaluator
    - cc.mallet.grmm.learning.DefaultAcrfTrainer.FileEvaluator
    - cc.mallet.grmm.learning.DefaultAcrfTrainer.LogEvaluator
    - cc.mallet.grmm.learning.MultiSegmentationEvaluatorACRF
  - cc.mallet.grmm.learning.extract.ACRFExtractor (implements cc.mallet.extract.Extractor)
  - cc.mallet.grmm.learning.extract.ACRFExtractorTrainer
  - cc.mallet.grmm.learning.extract.AcrfExtractorTui
  - cc.mallet.optimize.AGIS (implements cc.mallet.optimize.Optimizer)
  - cc.mallet.types.Alphabet (implements java.io.Serializable)
    - cc.mallet.types.LabelAlphabet (implements java.io.Serializable)
  - cc.mallet.types.AlphabetFactory
  - cc.mallet.pipe.iterator.ArrayDataAndTargetIterator (implements java.util.Iterator<E>)
  - cc.mallet.pipe.iterator.ArrayIterator (implements java.util.Iterator<E>)
  - cc.mallet.util.ArrayListUtils
  - cc.mallet.types.ArraySequence<E> (implements cc.mallet.types.Sequence<E>)
  - cc.mallet.util.ArrayUtils
  - junit.framework.Assert
    - junit.framework.TestCase (implements junit.framework.Test)
      - cc.mallet.grmm.test.TestAbstractBeliefPropagation
      - cc.mallet.types.tests.TestAlphabet
      - cc.mallet.grmm.test.TestAssignment
      - cc.mallet.grmm.test.TestAssignmentIterator
      - cc.mallet.util.tests.TestAStar
      - cc.mallet.types.tests.TestAugmentableFeatureVector
      - cc.mallet.grmm.test.TestBetaFactor
      - cc.mallet.grmm.test.TestBitVarSet
      - cc.mallet.classify.tests.TestClassifiers
      - cc.mallet.cluster.evaluate.tests.TestClusteringEvaluators
      - cc.mallet.fst.tests.TestCRF
      - cc.mallet.grmm.test.TestDirectedModel
      - cc.mallet.extract.test.TestDocumentExtraction
      - cc.mallet.extract.test.TestDocumentViewer
      - cc.mallet.grmm.test.TestFactorGraph
      - cc.mallet.grmm.test.TestFactors
      - cc.mallet.types.tests.TestFeatureSequence
      - cc.mallet.fst.tests.TestFeatureTransducer
      - cc.mallet.types.tests.TestFeatureVector
      - cc.mallet.grmm.test.TestGenericAcrfData2TokenSequence
      - cc.mallet.grmm.test.TestGibbsSampler
      - cc.mallet.grmm.test.TestHashClique
      - cc.mallet.types.tests.TestHashedSparseVector
      - cc.mallet.types.tests.TestIndexedSparseVector
      - cc.mallet.grmm.test.TestInference
      - cc.mallet.pipe.tests.TestInstancePipe
      - cc.mallet.cluster.iterator.tests.TestIterators
      - cc.mallet.pipe.tests.TestIterators
      - cc.mallet.types.tests.TestLabelAlphabet
      - cc.mallet.types.tests.TestLabelsSequence
      - cc.mallet.types.tests.TestLabelVector
      - cc.mallet.extract.test.TestLatticeViewer
      - cc.mallet.grmm.test.TestListVarSet
      - cc.mallet.grmm.test.TestLogTableFactor
      - cc.mallet.util.tests.TestMaths
      - cc.mallet.types.tests.TestMatrix
      - cc.mallet.types.tests.TestMatrixn
      - cc.mallet.classify.tests.TestMaxEntTrainer
      - cc.mallet.fst.tests.TestMEMM
      - cc.mallet.grmm.test.TestMIntInt2ObjectMap
      - cc.mallet.types.tests.TestMultinomial
      - cc.mallet.classify.tests.TestNaiveBayes
      - cc.mallet.grmm.test.TestNormalFactor
      - cc.mallet.pipe.tsf.tests.TestOffsetConjunctions
      - cc.mallet.pipe.tsf.tests.TestOffsetFeatureConjunctions
      - cc.mallet.optimize.tests.TestOptimizable
      - cc.mallet.optimize.tests.TestOptimizer
      - cc.mallet.types.tests.TestPagedInstanceList
      - cc.mallet.pipe.iterator.tests.TestPatternMatchIterator
      - cc.mallet.extract.test.TestPerDocumentF1Evaluator
      - cc.mallet.pipe.tests.TestPipeUtils
      - cc.mallet.grmm.test.TestPottsFactor
      - cc.mallet.util.tests.TestPriorityQueue
      - cc.mallet.util.tests.TestPropertyList
      - cc.mallet.pipe.tests.TestRainbowStyle
      - cc.mallet.util.tests.TestRandom
      - cc.mallet.grmm.test.TestRandomGraphs
      - cc.mallet.types.tests.TestRankedFeatureVector
      - cc.mallet.pipe.tsf.tests.TestSequencePrintingPipe
      - cc.mallet.types.tests.TestSerializable
      - cc.mallet.pipe.tests.TestSGML2TokenSequence
      - cc.mallet.pipe.tests.TestSpacePipe
      - cc.mallet.types.tests.TestSparseMatrixn
      - cc.mallet.types.tests.TestSparseVector
      - cc.mallet.classify.tests.TestStaticParameters
      - cc.mallet.util.tests.TestStrings
      - cc.mallet.fst.tests.TestSumNegLogProb2
      - cc.mallet.grmm.test.TestTableFactor
      - cc.mallet.types.tests.TestToken
      - cc.mallet.grmm.test.TestTRP
      - cc.mallet.grmm.test.TestUndirectedModel
      - cc.mallet.grmm.test.TestUniformFactor
      - cc.mallet.grmm.test.TestUniNormalFactor
  - cc.mallet.util.search.AStar (implements java.util.Iterator<E>)
  - cc.mallet.optimize.BackTrackLineSearch (implements cc.mallet.optimize.LineOptimizer.ByGradient)
  - cc.mallet.grmm.types.BidirectionalIntObjectMap (implements java.io.Serializable)
  - cc.mallet.extract.BIOTokenizationFilter (implements java.io.Serializable, cc.mallet.extract.TokenizationFilter)
    - cc.mallet.extract.BIOTokenizationFilterWithTokenIndices
  - cc.mallet.grmm.inference.gbp.BPRegionGenerator (implements cc.mallet.grmm.inference.gbp.RegionGraphGenerator)
  - cc.mallet.util.BulkLoader
  - cc.mallet.classify.C45.Node (implements java.io.Serializable)
  - cc.mallet.classify.tui.Calo2Classify
  - cc.mallet.types.ChainedInstanceIterator (implements java.util.Iterator<E>)
  - cc.mallet.util.CharSequenceLexer (implements cc.mallet.util.Lexer, java.io.Serializable)
  - cc.mallet.classify.Classification (implements java.io.Serializable)
  - cc.mallet.classify.Classifier (implements cc.mallet.types.AlphabetCarrying, java.io.Serializable)
    - cc.mallet.classify.AdaBoost
    - cc.mallet.classify.AdaBoostM2 (implements java.io.Serializable)
    - cc.mallet.pipe.AddClassifierTokenPredictions.TokenClassifiers (implements java.io.Serializable)
    - cc.mallet.classify.BaggingClassifier
    - cc.mallet.classify.BalancedWinnow (implements java.io.Serializable)
    - cc.mallet.classify.C45 (implements cc.mallet.classify.Boostable, java.io.Serializable)
    - cc.mallet.classify.ClassifierEnsemble
    - cc.mallet.classify.ConfidencePredictingClassifier
    - cc.mallet.classify.DecisionTree (implements java.io.Serializable)
    - cc.mallet.classify.MaxEnt (implements java.io.Serializable)
      - cc.mallet.classify.RankMaxEnt
    - cc.mallet.classify.MCMaxEnt (implements java.io.Serializable)
    - cc.mallet.classify.NaiveBayes (implements java.io.Serializable)
    - cc.mallet.classify.Winnow
  - cc.mallet.classify.tui.Classifier2Info
  - cc.mallet.classify.ClassifierEvaluator
    - cc.mallet.classify.ClassifierAccuracyEvaluator
  - cc.mallet.classify.ClassifierTrainer<C>
    - cc.mallet.classify.AdaBoostM2Trainer
    - cc.mallet.classify.AdaBoostTrainer
    - cc.mallet.classify.BaggingTrainer
    - cc.mallet.classify.BalancedWinnowTrainer (implements cc.mallet.classify.Boostable, java.io.Serializable)
    - cc.mallet.classify.C45Trainer (implements cc.mallet.classify.Boostable)
    - cc.mallet.classify.ClassifierEnsembleTrainer
    - cc.mallet.classify.ConfidencePredictingClassifierTrainer (implements cc.mallet.classify.Boostable)
    - cc.mallet.classify.DecisionTreeTrainer (implements cc.mallet.classify.Boostable)
    - cc.mallet.classify.FeatureSelectingClassifierTrainer
    - cc.mallet.classify.MaxEntGETrainer (implements cc.mallet.classify.Boostable, cc.mallet.classify.ClassifierTrainer.ByOptimization<C>, java.io.Serializable)
    - cc.mallet.classify.MaxEntTrainer (implements cc.mallet.classify.Boostable, cc.mallet.classify.ClassifierTrainer.ByOptimization<C>, java.io.Serializable)
      - cc.mallet.classify.MaxEntL1Trainer
      - cc.mallet.classify.RankMaxEntTrainer
    - cc.mallet.classify.MCMaxEntTrainer (implements cc.mallet.classify.Boostable, java.io.Serializable)
    - cc.mallet.classify.NaiveBayesEMTrainer
    - cc.mallet.classify.NaiveBayesTrainer (implements cc.mallet.types.AlphabetCarrying, cc.mallet.classify.Boostable, cc.mallet.classify.ClassifierTrainer.ByInstanceIncrements<C>, java.io.Serializable)
    - cc.mallet.classify.WinnowTrainer
  - cc.mallet.classify.ClassifierTrainer.Factory<CT>
    - cc.mallet.classify.DecisionTreeTrainer.Factory
    - cc.mallet.classify.NaiveBayesTrainer.Factory
  - cc.mallet.cluster.neighbor_evaluator.ClassifyingNeighborEvaluator (implements cc.mallet.cluster.neighbor_evaluator.NeighborEvaluator, java.io.Serializable)
    - cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator
    - cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator
    - cc.mallet.cluster.neighbor_evaluator.RankingNeighborEvaluator
  - cc.mallet.cluster.Clusterer (implements java.io.Serializable)
    - cc.mallet.cluster.KBestClusterer
      - cc.mallet.cluster.HillClimbingClusterer
        - cc.mallet.cluster.GreedyAgglomerative
          - cc.mallet.cluster.GreedyAgglomerativeByDensity
    - cc.mallet.cluster.KMeans
  - cc.mallet.cluster.Clustering (implements java.io.Serializable)
  - cc.mallet.cluster.evaluate.ClusteringEvaluator
    - cc.mallet.cluster.evaluate.AccuracyEvaluator
    - cc.mallet.cluster.evaluate.BCubedEvaluator
    - cc.mallet.cluster.evaluate.ClusteringEvaluators
    - cc.mallet.cluster.evaluate.MUCEvaluator
    - cc.mallet.cluster.evaluate.PairF1Evaluator
  - cc.mallet.cluster.Clusterings (implements java.io.Serializable)
  - cc.mallet.cluster.tui.Clusterings2Clusterer
  - cc.mallet.cluster.tui.Clusterings2Clusterings
  - cc.mallet.cluster.tui.Clusterings2Info
  - cc.mallet.cluster.util.ClusterUtils
  - cc.mallet.grmm.inference.gbp.ClusterVariationalRegionGenerator (implements cc.mallet.grmm.inference.gbp.RegionGraphGenerator)
  - cc.mallet.grmm.inference.gbp.ClusterVariationalRegionGenerator.ByFactorRegionComputer (implements cc.mallet.grmm.inference.gbp.ClusterVariationalRegionGenerator.BaseRegionComputer)
  - cc.mallet.grmm.inference.gbp.ClusterVariationalRegionGenerator.Grid2x2RegionComputer (implements cc.mallet.grmm.inference.gbp.ClusterVariationalRegionGenerator.BaseRegionComputer)
  - cc.mallet.util.CollectionUtils
  - cc.mallet.util.ColorUtils
  - cc.mallet.util.CommandOption
    - cc.mallet.util.CommandOption.Boolean
    - cc.mallet.util.CommandOption.Double
    - cc.mallet.util.CommandOption.DoubleArray
    - cc.mallet.util.CommandOption.File
    - cc.mallet.util.CommandOption.Integer
    - cc.mallet.util.CommandOption.IntegerArray
    - cc.mallet.util.CommandOption.Object
      - cc.mallet.util.CommandOption.ObjectFromBean
    - cc.mallet.util.CommandOption.Set
    - cc.mallet.util.CommandOption.SpacedStrings
    - cc.mallet.util.CommandOption.String
  - cc.mallet.util.CommandOption.List
  - java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    - java.awt.Canvas (implements javax.accessibility.Accessible)
      - cc.mallet.classify.evaluate.Graph
        - cc.mallet.classify.evaluate.Graph2
  - cc.mallet.pipe.iterator.ConcatenatedInstanceIterator (implements java.util.Iterator<E>)
  - cc.mallet.fst.confidence.ConfidenceCorrectorEvaluator
  - cc.mallet.fst.confidence.ConfidenceEvaluator
  - cc.mallet.fst.confidence.ConfidenceEvaluator.EntityConfidence
  - cc.mallet.extract.ConfidenceTokenizationFilter (implements java.io.Serializable, cc.mallet.extract.TokenizationFilter)
  - cc.mallet.classify.evaluate.ConfusionMatrix
  - cc.mallet.optimize.ConjugateGradient (implements cc.mallet.optimize.Optimizer)
  - cc.mallet.fst.confidence.ConstrainedViterbiTransducerCorrector (implements cc.mallet.fst.confidence.TransducerCorrector)
  - cc.mallet.grmm.types.CPT (implements cc.mallet.grmm.types.DiscreteFactor)
  - cc.mallet.fst.CRF.Factors (implements java.io.Serializable)
  - cc.mallet.fst.CRF.Factors.Incrementor (implements cc.mallet.fst.Transducer.Incrementor)
  - cc.mallet.fst.CRF.Factors.WeightedIncrementor (implements cc.mallet.fst.Transducer.Incrementor)
  - cc.mallet.fst.CRFCacheStaleIndicator (implements cc.mallet.fst.CacheStaleIndicator)
  - cc.mallet.extract.CRFExtractor (implements cc.mallet.extract.Extractor)
  - cc.mallet.fst.CRFOptimizableByBatchLabelLikelihood (implements cc.mallet.optimize.Optimizable.ByCombiningBatchGradient, java.io.Serializable)
  - cc.mallet.fst.CRFOptimizableByBatchLabelLikelihood.Factory
  - cc.mallet.fst.semi_supervised.CRFOptimizableByEntropyRegularization (implements cc.mallet.optimize.Optimizable.ByGradientValue, java.io.Serializable)
  - cc.mallet.fst.semi_supervised.CRFOptimizableByGECriteria (implements cc.mallet.optimize.Optimizable.ByGradientValue, java.io.Serializable)
  - cc.mallet.fst.CRFOptimizableByGradientValues (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - cc.mallet.fst.CRFOptimizableByLabelLikelihood (implements cc.mallet.optimize.Optimizable.ByGradientValue, java.io.Serializable)
    - cc.mallet.fst.MEMMTrainer.MEMMOptimizableByLabelLikelihood (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - cc.mallet.fst.CRFOptimizableByLabelLikelihood.Factory
  - cc.mallet.fst.CRFTrainerByValueGradients.OptimizableCRF (implements cc.mallet.optimize.Optimizable.ByGradientValue, java.io.Serializable)
  - cc.mallet.types.CrossValidationIterator (implements java.util.Iterator<E>, java.io.Serializable)
  - cc.mallet.grmm.util.CSIntInt2ObjectMultiMap
  - cc.mallet.classify.tui.Csv2Classify
  - cc.mallet.classify.tui.Csv2Vectors
  - cc.mallet.pipe.iterator.CsvIterator (implements java.util.Iterator<E>)
  - cc.mallet.classify.DecisionTree.Node (implements java.io.Serializable)
  - cc.mallet.grmm.learning.DefaultAcrfTrainer (implements cc.mallet.grmm.learning.ACRFTrainer)
  - cc.mallet.grmm.learning.DefaultAcrfTrainer.TestResults
  - cc.mallet.extract.DefaultTokenizationFilter (implements java.io.Serializable, cc.mallet.extract.TokenizationFilter)
  - cc.mallet.types.DenseMatrix (implements cc.mallet.types.Matrix, java.io.Serializable)
    - cc.mallet.types.DenseVector (implements java.io.Serializable, cc.mallet.types.Vector)
    - cc.mallet.types.Matrix2
    - cc.mallet.types.Matrixn (implements java.lang.Cloneable)
  - cc.mallet.util.DirectoryFilter (implements java.io.FileFilter)
  - cc.mallet.types.Dirichlet
  - cc.mallet.types.Dirichlet.Estimator
    - cc.mallet.types.Dirichlet.MethodOfMomentsEstimator
  - cc.mallet.topics.tui.DMRLoader (implements java.io.Serializable)
  - cc.mallet.topics.DMROptimizable (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - cc.mallet.classify.examples.DocumentClassifier
  - cc.mallet.extract.DocumentExtraction (implements java.io.Serializable)
  - cc.mallet.extract.DocumentViewer
  - cc.mallet.util.DoubleList (implements java.io.Serializable)
  - cc.mallet.pipe.iterator.EmptyInstanceIterator (implements java.util.Iterator<E>)
  - cc.mallet.fst.semi_supervised.EntropyLattice
  - cc.mallet.fst.semi_supervised.EntropyLattice.LatticeNode
  - cc.mallet.topics.tui.EvaluateTopics
  - cc.mallet.extract.ExactMatchComparator (implements cc.mallet.extract.FieldComparator)
  - cc.mallet.grmm.inference.ExactSampler (implements cc.mallet.grmm.inference.Sampler)
  - cc.mallet.util.resources.wn.Examples
  - cc.mallet.types.ExpGain.Factory (implements cc.mallet.types.RankedFeatureVector.Factory)
  - cc.mallet.extract.Extraction
  - cc.mallet.extract.ExtractionConfidenceEstimator
    - cc.mallet.extract.TransducerExtractionConfidenceEstimator (implements java.io.Serializable)
  - cc.mallet.grmm.types.FactorGraph (implements cc.mallet.grmm.types.Factor)
    - cc.mallet.grmm.types.DirectedModel
    - cc.mallet.grmm.types.UndirectedModel
      - cc.mallet.grmm.learning.ACRF.UnrolledGraph
      - cc.mallet.grmm.types.UndirectedGrid
  - cc.mallet.grmm.inference.gbp.FactorizedRegion
  - cc.mallet.grmm.types.Factors
  - cc.mallet.types.FeatureConjunction (implements java.io.Serializable)
  - cc.mallet.types.FeatureConjunction.List (implements java.io.Serializable)
  - cc.mallet.classify.FeatureConstraintUtil
  - cc.mallet.types.FeatureCounter
  - cc.mallet.types.FeatureCounts.Factory (implements cc.mallet.types.RankedFeatureVector.Factory)
  - cc.mallet.types.FeatureInducer (implements java.io.Serializable)
  - cc.mallet.types.FeatureSelection (implements cc.mallet.types.AlphabetCarrying, java.io.Serializable)
  - cc.mallet.types.FeatureSelector
  - cc.mallet.types.FeatureSequence (implements cc.mallet.types.AlphabetCarrying, cc.mallet.types.Sequence<E>, java.io.Serializable)
    - cc.mallet.types.FeatureSequenceWithBigrams
    - cc.mallet.types.LabelSequence (implements cc.mallet.types.AlphabetCarrying, java.io.Serializable)
  - cc.mallet.fst.FeatureTransducer.Transition
  - cc.mallet.types.FeatureVectorSequence (implements cc.mallet.types.AlphabetCarrying, cc.mallet.types.Sequence<E>, java.io.Serializable)
    - cc.mallet.types.StringEditFeatureVectorSequence (implements java.io.Serializable)
  - cc.mallet.types.FeatureVectorSequence.Iterator (implements java.util.Iterator<E>)
  - cc.mallet.extract.Field
  - cc.mallet.pipe.iterator.FileIterator (implements java.util.Iterator<E>)
    - cc.mallet.pipe.iterator.FileUriIterator
  - cc.mallet.pipe.iterator.FileListIterator (implements java.util.Iterator<E>)
  - cc.mallet.util.FileUtils
  - cc.mallet.cluster.examples.FirstOrderClusterExample
  - cc.mallet.grmm.util.Flops
  - cc.mallet.grmm.util.Flops.Watch
  - java.util.logging.Formatter
    - java.util.logging.SimpleFormatter
      - cc.mallet.util.PlainLogFormatter
      - cc.mallet.util.ProgressMessageLogFormatter
  - cc.mallet.fst.semi_supervised.GECriteria
    - cc.mallet.fst.semi_supervised.GEKLCriteria
    - cc.mallet.fst.semi_supervised.GEL2Criteria
  - cc.mallet.fst.semi_supervised.GECriterion
    - cc.mallet.fst.semi_supervised.GEKLCriterion
    - cc.mallet.fst.semi_supervised.GEL2Criterion
  - cc.mallet.fst.semi_supervised.GELattice
  - cc.mallet.fst.semi_supervised.GELattice.LatticeNode
  - cc.mallet.grmm.util.GeneralUtils
  - cc.mallet.grmm.learning.GenericAcrfTui
  - cc.mallet.grmm.inference.GibbsSampler (implements cc.mallet.grmm.inference.Sampler)
  - cc.mallet.optimize.GradientAscent (implements cc.mallet.optimize.Optimizer)
  - cc.mallet.optimize.GradientBracketLineOptimizer (implements cc.mallet.optimize.LineOptimizer)
  - cc.mallet.types.GradientGain.Factory (implements cc.mallet.types.RankedFeatureVector.Factory)
  - cc.mallet.classify.evaluate.Graph.Legend
  - cc.mallet.classify.evaluate.GraphItem
  - cc.mallet.grmm.util.Graphs
  - cc.mallet.grmm.types.HashVarSet (implements java.io.Serializable, cc.mallet.grmm.types.VarSet)
    - cc.mallet.grmm.learning.ACRF.UnrolledVarSet
  - cc.mallet.topics.HierarchicalLDA
  - cc.mallet.topics.tui.HierarchicalLDATUI
  - cc.mallet.topics.HierarchicalPAM
  - cc.mallet.extract.HierarchicalTokenizationFilter (implements cc.mallet.extract.TokenizationFilter)
  - cc.mallet.fst.HMM.Incrementor (implements cc.mallet.fst.Transducer.Incrementor)
  - cc.mallet.fst.HMM.WeightedIncrementor (implements cc.mallet.fst.Transducer.Incrementor)
  - cc.mallet.types.IDSorter (implements java.lang.Comparable<T>)
  - cc.mallet.topics.tui.InferTopics
  - cc.mallet.types.InfoGain.Factory (implements cc.mallet.types.RankedFeatureVector.Factory)
  - cc.mallet.types.Instance (implements cc.mallet.types.AlphabetCarrying, java.lang.Cloneable, java.io.Serializable)
  - cc.mallet.types.InstanceList.CrossValidationIterator (implements java.util.Iterator<E>, java.io.Serializable)
  - cc.mallet.types.InstanceListTUI
  - cc.mallet.fst.confidence.InstanceWithConfidence (implements java.lang.Comparable<T>)
  - bsh.Interpreter (implements bsh.ConsoleInterface, java.lang.Runnable)
    - cc.mallet.util.BshInterpreter
  - cc.mallet.types.InvertedIndex
  - cc.mallet.util.IoUtils
  - cc.mallet.fst.confidence.IsolatedSegmentTransducerCorrector (implements cc.mallet.fst.confidence.TransducerCorrector)
  - cc.mallet.grmm.inference.gbp.Kikuchi4SquareRegionGenerator (implements cc.mallet.grmm.inference.gbp.RegionGraphGenerator)
  - cc.mallet.types.Label (implements cc.mallet.types.AlphabetCarrying, cc.mallet.types.Labeling, java.io.Serializable)
  - cc.mallet.extract.LabeledSpan (implements java.io.Serializable, cc.mallet.extract.Span)
  - cc.mallet.types.Labelings (implements cc.mallet.types.AlphabetCarrying)
  - cc.mallet.types.Labels (implements cc.mallet.types.AlphabetCarrying, java.io.Serializable)
  - cc.mallet.types.LabelSequence.Iterator (implements java.util.Iterator<E>)
  - cc.mallet.types.LabelsSequence (implements cc.mallet.types.AlphabetCarrying, cc.mallet.types.Sequence<E>, java.io.Serializable)
  - cc.mallet.extract.LatticeViewer
  - cc.mallet.topics.LDA (implements java.io.Serializable)
  - cc.mallet.topics.LDAHyper (implements java.io.Serializable)
    - cc.mallet.topics.DMRTopicModel
    - cc.mallet.topics.LDAStream
  - cc.mallet.topics.LDAHyper.Topication (implements java.io.Serializable)
  - cc.mallet.optimize.LimitedMemoryBFGS (implements cc.mallet.optimize.Optimizer)
  - cc.mallet.pipe.iterator.LineGroupIterator (implements java.util.Iterator<E>)
  - cc.mallet.pipe.iterator.LineIterator (implements java.util.Iterator<E>)
  - java.util.logging.Logger
    - cc.mallet.util.MalletLogger
      - cc.mallet.util.MalletProgressMessageLogger
  - java.util.logging.LogRecord (implements java.io.Serializable)
    - cc.mallet.util.ProgressMessageLogRecord
  - cc.mallet.topics.MarginalProbEstimator (implements java.io.Serializable)
  - cc.mallet.util.Maths
  - cc.mallet.grmm.util.Matrices
  - cc.mallet.types.MatrixOps
  - cc.mallet.classify.MaxEntOptimizableByGE (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - cc.mallet.classify.MaxEntOptimizableByLabelDistribution (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - cc.mallet.classify.MaxEntOptimizableByLabelLikelihood (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - cc.mallet.share.upenn.MaxEntShell
  - cc.mallet.fst.MaxLatticeDefault (implements cc.mallet.fst.MaxLattice)
  - cc.mallet.fst.MaxLatticeFactory (implements java.io.Serializable)
    - cc.mallet.fst.MaxLatticeDefault.Factory (implements java.io.Serializable)
  - cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator.Average (implements cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator.CombiningStrategy)
  - cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator.Maximum (implements cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator.CombiningStrategy)
  - cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator.Minimum (implements cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator.CombiningStrategy)
  - cc.mallet.grmm.inference.MessageArray
  - cc.mallet.grmm.inference.MessageArray.Iterator (implements java.util.Iterator<E>)
  - cc.mallet.grmm.inference.MessageArray.ToMsgsIterator
  - cc.mallet.util.search.MinHeap (implements cc.mallet.util.search.PriorityQueue)
  - cc.mallet.types.Minkowski (implements cc.mallet.types.Metric)
  - cc.mallet.grmm.util.MIntInt2ObjectMap (implements java.io.Serializable)
  - cc.mallet.grmm.util.ModelReader
  - cc.mallet.grmm.util.Models
  - cc.mallet.types.Multinomial.Estimator (implements java.lang.Cloneable, java.io.Serializable)
    - cc.mallet.types.Multinomial.MAPEstimator
    - cc.mallet.types.Multinomial.MEstimator
      - cc.mallet.types.Multinomial.LaplaceEstimator
      - cc.mallet.types.Multinomial.MLEstimator
  - cc.mallet.topics.MultinomialHMM
  - cc.mallet.grmm.learning.MultiSegmentationEvaluatorACRF.TestResults
  - cc.mallet.util.MVNormal
  - cc.mallet.cluster.neighbor_evaluator.Neighbor (implements java.io.Serializable)
    - cc.mallet.cluster.neighbor_evaluator.AgglomerativeNeighbor
  - cc.mallet.cluster.iterator.NeighborIterator (implements java.util.Iterator<E>)
    - cc.mallet.cluster.iterator.AllPairsIterator
    - cc.mallet.cluster.iterator.PairSampleIterator
      - cc.mallet.cluster.iterator.ClusterSampleIterator
        - cc.mallet.cluster.iterator.NodeClusterSampleIterator
  - cc.mallet.types.NormalizedDotProductMetric (implements cc.mallet.types.CachedMetric)
  - cc.mallet.topics.NPTopicModel (implements java.io.Serializable)
  - cc.mallet.optimize.OptimizableCollection
  - cc.mallet.optimize.OptimizableCollection.ByGradientValue (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - cc.mallet.optimize.OrthantWiseLimitedMemoryBFGS (implements cc.mallet.optimize.Optimizer)
  - cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Average (implements cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.CombiningStrategy, java.io.Serializable)
  - cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Maximum (implements cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.CombiningStrategy, java.io.Serializable)
  - cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Minimum (implements cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.CombiningStrategy, java.io.Serializable)
  - cc.mallet.cluster.util.PairwiseMatrix (implements java.io.Serializable)
  - cc.mallet.cluster.clustering_scorer.PairwiseScorer (implements cc.mallet.cluster.clustering_scorer.ClusteringScorer)
  - cc.mallet.topics.PAM4L
  - cc.mallet.topics.ParallelTopicModel (implements java.io.Serializable)
  - cc.mallet.pipe.iterator.ParenGroupIterator (implements java.util.Iterator<E>)
  - cc.mallet.pipe.iterator.PatternMatchIterator (implements java.util.Iterator<E>)
  - cc.mallet.extract.PerDocumentF1Evaluator (implements cc.mallet.extract.ExtractionEvaluator)
  - cc.mallet.extract.PerFieldF1Evaluator (implements cc.mallet.extract.ExtractionEvaluator)
  - cc.mallet.types.PerLabelFeatureCounts
  - cc.mallet.types.PerLabelFeatureCounts.Factory (implements cc.mallet.types.RankedFeatureVector.PerLabelFactory)
  - cc.mallet.types.PerLabelInfoGain
  - cc.mallet.types.PerLabelInfoGain.Factory (implements cc.mallet.types.RankedFeatureVector.PerLabelFactory)
  - cc.mallet.pipe.Pipe (implements cc.mallet.types.AlphabetCarrying, java.io.Serializable)
    - cc.mallet.pipe.AddClassifierTokenPredictions (implements java.io.Serializable)
    - cc.mallet.pipe.Array2FeatureVector
    - cc.mallet.pipe.AugmentableFeatureVectorAddConjunctions (implements java.io.Serializable)
    - cc.mallet.pipe.AugmentableFeatureVectorLogScale
    - cc.mallet.pipe.BranchingPipe
    - cc.mallet.pipe.CharSequence2CharNGrams (implements java.io.Serializable)
    - cc.mallet.pipe.CharSequence2TokenSequence (implements java.io.Serializable)
    - cc.mallet.pipe.CharSequenceArray2TokenSequence (implements java.io.Serializable)
    - cc.mallet.pipe.CharSequenceLowercase (implements java.io.Serializable)
    - cc.mallet.pipe.CharSequenceRemoveHTML
    - cc.mallet.pipe.CharSequenceRemoveUUEncodedBlocks
    - cc.mallet.pipe.CharSequenceReplace (implements java.io.Serializable)
    - cc.mallet.pipe.CharSubsequence (implements java.io.Serializable)
    - cc.mallet.pipe.Classification2ConfidencePredictingFeatureVector
    - cc.mallet.cluster.tui.Clusterings2Clusterer.ClusteringPipe
    - cc.mallet.share.casutton.ner.ConllNer2003Sentence2TokenSequence
    - cc.mallet.share.mccallum.ner.ConllNer2003Sentence2TokenSequence
    - cc.mallet.pipe.tsf.CountMatches
    - cc.mallet.pipe.tsf.CountMatchesAlignedWithOffsets
    - cc.mallet.pipe.tsf.CountMatchesMatching
    - cc.mallet.pipe.Csv2Array
    - cc.mallet.pipe.Csv2FeatureVector
    - cc.mallet.pipe.Directory2FileIterator
    - cc.mallet.share.weili.ner.enron.EnronMessage2TokenSequence (implements java.io.Serializable)
    - cc.mallet.pipe.FeatureCountPipe
    - cc.mallet.pipe.FeatureSequence2AugmentableFeatureVector
    - cc.mallet.pipe.FeatureSequence2FeatureVector (implements java.io.Serializable)
    - cc.mallet.pipe.FeatureSequenceConvolution
    - cc.mallet.pipe.tsf.FeaturesInWindow (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.FeaturesOfFirstMention (implements java.io.Serializable)
    - cc.mallet.pipe.FeatureValueString2FeatureVector (implements java.io.Serializable)
    - cc.mallet.pipe.FeatureVectorConjunctions (implements java.io.Serializable)
    - cc.mallet.pipe.FeatureVectorSequence2FeatureVectors
    - cc.mallet.share.upenn.ner.FeatureWindow (implements java.io.Serializable)
    - cc.mallet.pipe.Filename2CharSequence (implements java.io.Serializable)
    - cc.mallet.pipe.FilterEmptyFeatureVectors
    - cc.mallet.grmm.learning.GenericAcrfData2TokenSequence
    - cc.mallet.pipe.Input2CharSequence (implements java.io.Serializable)
    - cc.mallet.pipe.InstanceListTrimFeaturesByCount (implements java.io.Serializable)
    - cc.mallet.grmm.util.LabelsSequence2Assignment
    - cc.mallet.share.upenn.ner.LengthBins (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.LexiconMembership (implements java.io.Serializable)
    - cc.mallet.pipe.LineGroupString2TokenSequence (implements java.io.Serializable)
    - cc.mallet.share.upenn.ner.ListMember (implements java.io.Serializable)
    - cc.mallet.share.upenn.ner.LongRegexMatches (implements java.io.Serializable)
    - cc.mallet.pipe.MakeAmpersandXMLFriendly (implements java.io.Serializable)
    - cc.mallet.pipe.Noop (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.OffsetConjunctions (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.OffsetFeatureConjunction (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.OffsetPropertyConjunctions (implements java.io.Serializable)
    - cc.mallet.pipe.PrintInput (implements java.io.Serializable)
    - cc.mallet.pipe.PrintInputAndTarget (implements java.io.Serializable)
    - cc.mallet.pipe.PrintTokenSequenceFeatures (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.RegexMatches (implements java.io.Serializable)
    - cc.mallet.grmm.util.RememberTokenizationPipe
    - cc.mallet.pipe.SaveDataInSource (implements java.io.Serializable)
    - cc.mallet.pipe.SelectiveSGML2TokenSequence (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.SequencePrintingPipe
    - cc.mallet.pipe.SerialPipes (implements java.io.Serializable)
      - cc.mallet.share.upenn.ner.NEPipes
    - cc.mallet.pipe.SGML2TokenSequence (implements java.io.Serializable)
    - cc.mallet.fst.SimpleTagger.SimpleTaggerSentence2FeatureVectorSequence
    - cc.mallet.pipe.SimpleTaggerSentence2TokenSequence
      - cc.mallet.pipe.SimpleTaggerSentence2StringTokenization
    - cc.mallet.pipe.SimpleTokenizer
    - cc.mallet.grmm.util.SliceLabelsSequence
    - cc.mallet.pipe.SourceLocation2TokenSequence (implements java.io.Serializable)
    - cc.mallet.pipe.StringAddNewLineDelimiter (implements java.io.Serializable)
    - cc.mallet.pipe.StringList2FeatureSequence
    - cc.mallet.pipe.SvmLight2FeatureVectorAndLabel
    - cc.mallet.pipe.tsf.Target2BIOFormat (implements java.io.Serializable)
    - cc.mallet.pipe.Target2FeatureSequence (implements java.io.Serializable)
    - cc.mallet.pipe.Target2Label
    - cc.mallet.pipe.Target2LabelSequence (implements java.io.Serializable)
    - cc.mallet.pipe.TargetRememberLastLabel
    - cc.mallet.pipe.TargetStringToFeatures (implements java.io.Serializable)
    - cc.mallet.fst.tests.TestCRF.TestCRF2String (implements java.io.Serializable)
    - cc.mallet.fst.tests.TestCRF.TestCRFTokenSequenceRemoveSpaces (implements java.io.Serializable)
    - cc.mallet.pipe.tests.TestInstancePipe.Array2ArrayIterator
    - cc.mallet.fst.tests.TestMEMM.TestMEMM2String (implements java.io.Serializable)
    - cc.mallet.fst.tests.TestMEMM.TestMEMMTokenSequenceRemoveSpaces (implements java.io.Serializable)
    - cc.mallet.pipe.tests.TestSGML2TokenSequence.Array2ArrayIterator
    - cc.mallet.pipe.Token2FeatureVector (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.TokenFirstPosition (implements java.io.Serializable)
    - cc.mallet.pipe.TokenSequence2FeatureSequence
    - cc.mallet.pipe.TokenSequence2FeatureSequenceWithBigrams
    - cc.mallet.pipe.TokenSequence2FeatureVectorSequence (implements java.io.Serializable)
    - cc.mallet.pipe.TokenSequence2TokenInstances
    - cc.mallet.extract.pipe.TokenSequence2Tokenization
    - cc.mallet.share.mccallum.ner.TokenSequenceDocHeader (implements java.io.Serializable)
    - cc.mallet.pipe.TokenSequenceLowercase (implements java.io.Serializable)
    - cc.mallet.pipe.TokenSequenceMatchDataAndTarget (implements java.io.Serializable)
    - cc.mallet.pipe.TokenSequenceNGrams (implements java.io.Serializable)
    - cc.mallet.pipe.TokenSequenceParseFeatureString (implements java.io.Serializable)
    - cc.mallet.pipe.TokenSequenceRemoveNonAlpha
    - cc.mallet.pipe.TokenSequenceRemoveStopwords (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.TokenText (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.TokenTextCharNGrams (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.TokenTextCharPrefix (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.TokenTextCharSuffix (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.TokenTextNGrams (implements java.io.Serializable)
    - cc.mallet.pipe.tsf.TrieLexiconMembership (implements java.io.Serializable)
  - cc.mallet.fst.confidence.PipedInstanceWithConfidence (implements java.lang.Comparable<T>)
  - cc.mallet.grmm.util.PipedIterator (implements java.util.Iterator<E>)
  - cc.mallet.pipe.iterator.PipeExtendedIterator (implements java.util.Iterator<E>)
  - cc.mallet.pipe.iterator.PipeInputIterator (implements java.util.Iterator<E>)
  - cc.mallet.pipe.PipeUtils
  - cc.mallet.topics.PolylingualTopicModel (implements java.io.Serializable)
  - cc.mallet.topics.PolylingualTopicModel.TopicAssignment (implements java.io.Serializable)
  - cc.mallet.util.PrintUtilities (implements java.awt.print.Printable)
  - cc.mallet.util.PropertyList (implements java.io.Serializable)
  - cc.mallet.util.PropertyList.Iterator (implements java.util.Iterator<E>, java.io.Serializable)
    - cc.mallet.util.PropertyList.NumericIterator (implements java.io.Serializable)
    - cc.mallet.util.PropertyList.ObjectIterator (implements java.io.Serializable)
  - cc.mallet.extract.PunctuationIgnoringComparator (implements cc.mallet.extract.FieldComparator)
  - java.util.Random (implements java.io.Serializable)
    - cc.mallet.util.Randoms
  - cc.mallet.cluster.neighbor_evaluator.RandomEvaluator (implements cc.mallet.cluster.neighbor_evaluator.NeighborEvaluator, java.io.Serializable)
  - cc.mallet.pipe.iterator.RandomFeatureVectorIterator (implements java.util.Iterator<E>)
  - cc.mallet.grmm.inference.RandomGraphs
  - cc.mallet.grmm.inference.RandomGraphs.UniformFactorGenerator (implements cc.mallet.grmm.inference.RandomGraphs.FactorGenerator)
  - cc.mallet.pipe.iterator.RandomTokenSequenceIterator (implements java.util.Iterator<E>)
  - cc.mallet.cluster.Record (implements java.io.Serializable)
  - cc.mallet.extract.Record
  - cc.mallet.extract.RegexFieldCleaner (implements cc.mallet.extract.FieldCleaner)
  - cc.mallet.util.RegexFileFilter (implements java.io.FileFilter)
  - cc.mallet.types.ROCData (implements cc.mallet.types.AlphabetCarrying, java.io.Serializable)
  - cc.mallet.util.search.SearchNode (implements cc.mallet.util.search.QueueElement)
    - cc.mallet.util.search.AStarNode
  - cc.mallet.util.search.SearchNode.NextNodeIterator (implements java.util.Iterator<E>)
    - cc.mallet.util.search.AStarNode.NextNodeIterator
  - cc.mallet.util.search.SearchState.NextStateIterator (implements java.util.Iterator<E>)
  - cc.mallet.fst.Segment (implements java.lang.Comparable<T>)
  - cc.mallet.pipe.iterator.SegmentIterator (implements java.util.Iterator<E>)
  - cc.mallet.pipe.iterator.SelectiveFileLineIterator (implements java.util.Iterator<E>)
  - cc.mallet.fst.confidence.SequenceConfidenceInstance
  - cc.mallet.types.SequencePair<I,O>
    - cc.mallet.types.SequencePairAlignment<I,O>
  - cc.mallet.util.Sequences
  - cc.mallet.pipe.SerialPipes.Predicate
  - cc.mallet.grmm.learning.templates.SimilarTokensTemplate.WordFeatureBinner (implements java.io.Serializable, cc.mallet.grmm.learning.templates.SimilarTokensTemplate.FeatureVectorBinner)
    - cc.mallet.grmm.learning.templates.SimilarTokensTemplate.CapWordsBinner
  - cc.mallet.grmm.examples.SimpleCrfExample
  - cc.mallet.grmm.examples.SimpleFactorExample
  - cc.mallet.pipe.iterator.SimpleFileLineIterator (implements java.util.Iterator<E>)
  - cc.mallet.grmm.examples.SimpleGraphExample
  - cc.mallet.topics.SimpleLDA (implements java.io.Serializable)
  - cc.mallet.fst.SimpleTagger
  - cc.mallet.types.SingleInstanceIterator (implements java.util.Iterator<E>)
  - cc.mallet.types.SparseMatrixn (implements java.lang.Cloneable, cc.mallet.types.Matrix, java.io.Serializable)
  - cc.mallet.types.SparseVector (implements cc.mallet.types.ConstantMatrix, java.io.Serializable, cc.mallet.types.Vector)
    - cc.mallet.types.FeatureVector (implements cc.mallet.types.AlphabetCarrying, java.io.Serializable)
      - cc.mallet.types.AugmentableFeatureVector (implements java.io.Serializable)
      - cc.mallet.types.Multinomial
        - cc.mallet.types.Multinomial.Logged
      - cc.mallet.types.RankedFeatureVector
        - cc.mallet.types.ExpGain
        - cc.mallet.types.FeatureCounts
        - cc.mallet.types.GainRatio
        - cc.mallet.types.GradientGain
        - cc.mallet.types.InfoGain
        - cc.mallet.types.KLGain
        - cc.mallet.types.LabelVector (implements cc.mallet.types.Labeling)
        - cc.mallet.types.PartiallyRankedFeatureVector
    - cc.mallet.types.HashedSparseVector (implements java.io.Serializable)
    - cc.mallet.types.IndexedSparseVector (implements java.io.Serializable)
  - cc.mallet.fst.semi_supervised.StateLabelMap
  - cc.mallet.util.StatFunctions
  - cc.mallet.optimize.StochasticMetaAscent (implements cc.mallet.optimize.Optimizer.ByBatches)
  - cc.mallet.pipe.iterator.StringArrayIterator (implements java.util.Iterator<E>)
  - cc.mallet.types.StringEditVector (implements java.io.Serializable)
  - cc.mallet.util.Strings
  - cc.mallet.fst.SumLatticeBeam (implements cc.mallet.fst.SumLattice)
  - cc.mallet.fst.SumLatticeDefault (implements cc.mallet.fst.SumLattice)
    - cc.mallet.fst.SumLatticeConstrained
  - cc.mallet.fst.SumLatticeDefault.LatticeNode
  - cc.mallet.fst.SumLatticeFactory (implements java.io.Serializable)
    - cc.mallet.fst.SumLatticeBeam.Factory
    - cc.mallet.fst.SumLatticeDefault.Factory (implements java.io.Serializable)
    - cc.mallet.fst.SumLatticeScaling.Factory (implements java.io.Serializable)
  - cc.mallet.fst.SumLatticeScaling (implements cc.mallet.fst.SumLattice)
  - cc.mallet.fst.SumLatticeScaling.LatticeNode
  - cc.mallet.classify.tui.SvmLight2Classify
  - cc.mallet.classify.tui.SvmLight2Vectors
  - cc.mallet.examples.TestCRFPipe
  - cc.mallet.types.tests.TestInstanceListWeights
  - cc.mallet.classify.tests.TestStaticParameters.Factory
  - cc.mallet.classify.tui.Text2Classify
  - cc.mallet.cluster.tui.Text2Clusterings
  - cc.mallet.classify.tui.Text2Vectors
  - cc.mallet.fst.ThreadedOptimizable (implements cc.mallet.optimize.Optimizable.ByGradientValue)
  - java.lang.Throwable (implements java.io.Serializable)
    - java.lang.Exception
      - cc.mallet.pipe.PipeException
      - java.lang.RuntimeException
        - cc.mallet.optimize.OptimizationException
          - cc.mallet.optimize.InvalidOptimizableException
  - cc.mallet.util.Timing
  - cc.mallet.types.Token (implements cc.mallet.types.PropertyHolder, java.io.Serializable)
    - cc.mallet.extract.StringSpan (implements cc.mallet.extract.Span)
  - cc.mallet.topics.TopicalNGrams
  - cc.mallet.topics.TopicAssignment (implements java.io.Serializable)
  - cc.mallet.topics.TopicInferencer (implements java.io.Serializable)
  - cc.mallet.topics.tui.TopicTrain
  - cc.mallet.examples.TrainCRF
  - cc.mallet.examples.TrainHMM
  - cc.mallet.fst.Transducer (implements java.io.Serializable)
    - cc.mallet.fst.CRF (implements java.io.Serializable)
      - cc.mallet.fst.MEMM (implements java.io.Serializable)
    - cc.mallet.fst.FeatureTransducer
    - cc.mallet.fst.HMM (implements java.io.Serializable)
  - cc.mallet.fst.Transducer.State (implements java.io.Serializable)
    - cc.mallet.fst.CRF.State (implements java.io.Serializable)
      - cc.mallet.fst.MEMM.State (implements java.io.Serializable)
    - cc.mallet.fst.FeatureTransducer.State
    - cc.mallet.fst.HMM.State (implements java.io.Serializable)
  - cc.mallet.fst.Transducer.TransitionIterator (implements java.util.Iterator<E>, java.io.Serializable)
    - cc.mallet.fst.CRF.TransitionIterator (implements java.io.Serializable)
      - cc.mallet.fst.MEMM.TransitionIterator (implements java.io.Serializable)
    - cc.mallet.fst.FeatureTransducer.TransitionIterator
    - cc.mallet.fst.HMM.TransitionIterator (implements java.io.Serializable)
  - cc.mallet.fst.confidence.TransducerConfidenceEstimator (implements java.io.Serializable)
    - cc.mallet.fst.confidence.ConstrainedForwardBackwardConfidenceEstimator
    - cc.mallet.fst.confidence.GammaAverageConfidenceEstimator
    - cc.mallet.fst.confidence.GammaProductConfidenceEstimator
    - cc.mallet.fst.confidence.MaxEntConfidenceEstimator
    - cc.mallet.fst.confidence.RandomConfidenceEstimator
  - cc.mallet.fst.TransducerEvaluator
    - cc.mallet.fst.CRFWriter
    - cc.mallet.fst.InstanceAccuracyEvaluator
    - cc.mallet.fst.LabelDistributionEvaluator
    - cc.mallet.fst.MultiSegmentationEvaluator
    - cc.mallet.fst.PerClassAccuracyEvaluator
    - cc.mallet.fst.SegmentationEvaluator
    - cc.mallet.fst.TokenAccuracyEvaluator
    - cc.mallet.fst.ViterbiWriter
  - cc.mallet.fst.confidence.TransducerSequenceConfidenceEstimator
    - cc.mallet.fst.confidence.MaxEntSequenceConfidenceEstimator
    - cc.mallet.fst.confidence.MinSegmentConfidenceEstimator
    - cc.mallet.fst.confidence.NBestViterbiConfidenceEstimator
    - cc.mallet.fst.confidence.QBCSequenceConfidenceEstimator
    - cc.mallet.fst.confidence.RandomSequenceConfidenceEstimator
    - cc.mallet.fst.confidence.SegmentProductConfidenceEstimator
    - cc.mallet.fst.confidence.ViterbiConfidenceEstimator
    - cc.mallet.fst.confidence.ViterbiRatioConfidenceEstimator
  - cc.mallet.fst.TransducerTrainer
    - cc.mallet.fst.semi_supervised.CRFTrainerByEntropyRegularization (implements cc.mallet.fst.TransducerTrainer.ByOptimization)
    - cc.mallet.fst.semi_supervised.CRFTrainerByGE
    - cc.mallet.fst.CRFTrainerByLabelLikelihood (implements cc.mallet.fst.TransducerTrainer.ByOptimization)
      - cc.mallet.fst.CRFTrainerByL1LabelLikelihood
    - cc.mallet.fst.CRFTrainerByThreadedLabelLikelihood (implements cc.mallet.fst.TransducerTrainer.ByOptimization)
    - cc.mallet.fst.CRFTrainerByValueGradients (implements cc.mallet.fst.TransducerTrainer.ByOptimization)
    - cc.mallet.fst.HMMTrainerByLikelihood
    - cc.mallet.fst.MEMMTrainer
    - cc.mallet.fst.NoopTransducerTrainer
    - cc.mallet.fst.ShallowTransducerTrainer
    - cc.mallet.fst.TransducerTrainer.ByIncrements
      - cc.mallet.fst.TransducerTrainer.ByInstanceIncrements
        - cc.mallet.fst.CRFTrainerByStochasticGradient
  - cc.mallet.grmm.types.Tree
    - cc.mallet.grmm.inference.JunctionTree
  - cc.mallet.grmm.inference.TRP.AlmostRandomTreeFactory (implements cc.mallet.grmm.inference.TRP.TreeFactory)
  - cc.mallet.grmm.inference.TRP.ConvergenceTerminator (implements cc.mallet.grmm.inference.TRP.TerminationCondition)
  - cc.mallet.grmm.inference.TRP.DefaultConvergenceTerminator (implements cc.mallet.grmm.inference.TRP.TerminationCondition)
  - cc.mallet.grmm.inference.TRP.IterationTerminator (implements cc.mallet.grmm.inference.TRP.TerminationCondition)
  - cc.mallet.grmm.inference.TRP.TreeListFactory (implements cc.mallet.grmm.inference.TRP.TreeFactory)
  - cc.mallet.share.mccallum.ner.TUI
  - cc.mallet.share.weili.ner.enron.TUI
  - cc.mallet.util.Univariate
  - cc.mallet.grmm.types.Universe (implements java.io.Serializable)
  - cc.mallet.pipe.iterator.UnlabeledFileIterator (implements java.util.Iterator<E>)
  - cc.mallet.grmm.types.UnmodifiableVarSet (implements java.io.Serializable, cc.mallet.grmm.types.VarSet)
  - cc.mallet.util.UriUtils
  - cc.mallet.grmm.inference.Utils
  - cc.mallet.grmm.types.Variable (implements java.lang.Comparable<T>, java.io.Serializable)
  - cc.mallet.classify.tui.Vectors2Classify
  - cc.mallet.classify.tui.Vectors2FeatureConstraints
  - cc.mallet.classify.tui.Vectors2Info
  - cc.mallet.topics.tui.Vectors2Topics
  - cc.mallet.classify.tui.Vectors2Vectors
  - cc.mallet.util.VectorStats
  - cc.mallet.share.weili.ner.WordTransformation
  - cc.mallet.topics.WorkerRunnable (implements java.lang.Runnable)

## Interface Hierarchy

- cc.mallet.grmm.inference.AbstractBeliefPropagation.MessageStrategy
- cc.mallet.grmm.learning.ACRFTrainer
- cc.mallet.util.Addable
- cc.mallet.types.AlphabetCarrying
  - cc.mallet.types.Labeling
- cc.mallet.classify.Boostable
- cc.mallet.fst.CacheStaleIndicator
- cc.mallet.classify.ClassifierTrainer.ByActiveLearning<C>
- cc.mallet.classify.ClassifierTrainer.ByIncrements<C>
  - cc.mallet.classify.ClassifierTrainer.ByInstanceIncrements<C>
- cc.mallet.classify.ClassifierTrainer.ByOptimization<C>
- java.lang.Cloneable
  - cc.mallet.grmm.types.DiscreteFactor
  - cc.mallet.grmm.types.Factor (also extends java.io.Serializable)
    - cc.mallet.grmm.types.DiscreteFactor
    - cc.mallet.grmm.types.ParameterizedFactor
  - cc.mallet.grmm.types.ParameterizedFactor
  - cc.mallet.grmm.inference.TRP.TerminationCondition (also extends java.io.Serializable)
  - cc.mallet.grmm.types.VarSet (also extends java.util.Set<E>)
- cc.mallet.cluster.clustering_scorer.ClusteringScorer
- cc.mallet.grmm.inference.gbp.ClusterVariationalRegionGenerator.BaseRegionComputer
- cc.mallet.util.CollectionUtils.Fn
- cc.mallet.util.CommandOption.ListProviding
- cc.mallet.types.ConstantMatrix
  - cc.mallet.types.Matrix
  - cc.mallet.types.Vector
- cc.mallet.extract.ExtractionEvaluator
- cc.mallet.extract.FieldCleaner
- cc.mallet.extract.FieldComparator
- java.lang.Iterable<T>
  - java.util.Collection<E>
    - java.util.Set<E>
      - cc.mallet.grmm.types.VarSet (also extends java.lang.Cloneable)
    - cc.mallet.grmm.types.VarSet (also extends java.lang.Cloneable, java.util.Set<E>)
  - java.util.Set<E>
    - cc.mallet.grmm.types.VarSet (also extends java.lang.Cloneable)
  - cc.mallet.grmm.types.VarSet (also extends java.lang.Cloneable, java.util.Set<E>)
- java.util.Iterator<E>
  - cc.mallet.grmm.types.AssignmentIterator
  - cc.mallet.util.Lexer
- cc.mallet.types.Labeler
- cc.mallet.optimize.LineOptimizer
- cc.mallet.optimize.LineOptimizer.ByGradient
- cc.mallet.fst.MaxLattice
- cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator.CombiningStrategy
- cc.mallet.grmm.inference.gbp.MessageStrategy
- cc.mallet.types.Metric
  - cc.mallet.types.CachedMetric
- cc.mallet.cluster.neighbor_evaluator.NeighborEvaluator
- cc.mallet.optimize.Optimizable
  - cc.mallet.optimize.Optimizable.ByBatchGradient
  - cc.mallet.optimize.Optimizable.ByCombiningBatchGradient
  - cc.mallet.optimize.Optimizable.ByGISUpdate
  - cc.mallet.optimize.Optimizable.ByGradient
  - cc.mallet.optimize.Optimizable.ByGradientValue
    - cc.mallet.optimize.Optimizable.ByHessian
  - cc.mallet.optimize.Optimizable.ByHessian
  - cc.mallet.optimize.Optimizable.ByValue
  - cc.mallet.optimize.Optimizable.ByVotedPerceptron
- cc.mallet.optimize.Optimizer
- cc.mallet.optimize.Optimizer.ByBatches
- cc.mallet.optimize.OptimizerEvaluator
- cc.mallet.optimize.OptimizerEvaluator.ByBatchGradient
- cc.mallet.optimize.OptimizerEvaluator.ByGradient
- cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.CombiningStrategy
- cc.mallet.types.PartiallyRankedFeatureVector.Factory
- cc.mallet.types.PartiallyRankedFeatureVector.PerLabelFactory
- cc.mallet.util.search.PriorityQueue
- cc.mallet.types.PropertyHolder
- cc.mallet.util.search.QueueElement
- cc.mallet.grmm.inference.RandomGraphs.FactorGenerator
- cc.mallet.types.RankedFeatureVector.Factory
- cc.mallet.types.RankedFeatureVector.PerLabelFactory
- cc.mallet.grmm.inference.gbp.RegionGraphGenerator
- cc.mallet.grmm.inference.Sampler
- cc.mallet.util.search.SearchState
  - cc.mallet.util.search.AStarState
- cc.mallet.types.Sequence<E>
  - cc.mallet.extract.Tokenization
- java.io.Serializable
  - cc.mallet.grmm.learning.ACRF.GraphPostProcessor
  - cc.mallet.grmm.types.DiscreteFactor
  - cc.mallet.extract.Extractor
  - cc.mallet.grmm.types.Factor (also extends java.lang.Cloneable)
    - cc.mallet.grmm.types.DiscreteFactor
    - cc.mallet.grmm.types.ParameterizedFactor
  - cc.mallet.grmm.inference.Inferencer
  - cc.mallet.grmm.types.ParameterizedFactor
  - cc.mallet.grmm.inference.TRP.TerminationCondition (also extends java.lang.Cloneable)
  - cc.mallet.grmm.inference.TRP.TreeFactory
- cc.mallet.grmm.learning.templates.SimilarTokensTemplate.FeatureVectorBinner
- cc.mallet.extract.Span
- cc.mallet.fst.SumLattice
- cc.mallet.extract.TokenizationFilter
- cc.mallet.fst.Transducer.Incrementor
- cc.mallet.fst.confidence.TransducerCorrector
- cc.mallet.fst.TransducerTrainer.ByOptimization

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