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# Serialized Form

Package cc.mallet.classify

Class cc.mallet.classify.AdaBoost extends Classifier implements Serializable

Serialized Fields

### weakClassifiers

    Classifier[] weakClassifiers

### alphas

    double[] alphas

Class cc.mallet.classify.AdaBoostM2 extends Classifier implements Serializable

serialVersionUID: 1L

Serialized Fields

### weakClassifiers

    Classifier[] weakClassifiers

### alphas

    double[] alphas

Class cc.mallet.classify.BaggingClassifier extends Classifier implements Serializable

Serialized Fields

### baggedClassifiers

    Classifier[] baggedClassifiers

### weights

    double[] weights

Class cc.mallet.classify.BalancedWinnow extends Classifier implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### m_weights

    double[][] m_weights

Class cc.mallet.classify.BalancedWinnowTrainer extends ClassifierTrainer<BalancedWinnow> implements Serializable

serialVersionUID: 1L

Serialized Fields

### m_epsilon

    double m_epsilon

### m_delta

    double m_delta

### m_maxIterations

    int m_maxIterations

### m_coolingRate

    double m_coolingRate

### m_weights

    double[][] m_weights

  Array of weights, one for each class and feature, initialized to 1. For each class, there is an additional default "feature" weight that is set to 1 in every example (it remains constant; this is used to prevent the instance from having 0 dot product with a class).

### classifier

    BalancedWinnow classifier

Class cc.mallet.classify.C45 extends Classifier implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### m_root

    C45.Node m_root

Class cc.mallet.classify.C45.Node extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

### m_gainRatio

    GainRatio m_gainRatio

### m_ilist

    InstanceList m_ilist

### m_instIndices

    int[] m_instIndices

### m_dataDict

    Alphabet m_dataDict

### m_minNumInsts

    int m_minNumInsts

### m_parent

    C45.Node m_parent

### m_leftChild

    C45.Node m_leftChild

### m_rightChild

    C45.Node m_rightChild

Class cc.mallet.classify.Classification extends java.lang.Object implements Serializable

Serialized Fields

### instance

    Instance instance

### classifier

    Classifier classifier

### labeling

    Labeling labeling

Class cc.mallet.classify.Classifier extends java.lang.Object implements Serializable

Serialized Fields

### instancePipe

    Pipe instancePipe

Class cc.mallet.classify.ClassifierEnsemble extends Classifier implements Serializable

Serialized Fields

### ensemble

    Classifier[] ensemble

### weights

    double[] weights

Class cc.mallet.classify.ConfidencePredictingClassifier extends Classifier implements Serializable

Serialized Fields

### underlyingClassifier

    Classifier underlyingClassifier

### confidencePredictingClassifier

    Classifier confidencePredictingClassifier

### totalCorrect

    double totalCorrect

### totalIncorrect

    double totalIncorrect

### totalIncorrectIncorrect

    double totalIncorrectIncorrect

### totalIncorrectCorrect

    double totalIncorrectCorrect

### numCorrectInstances

    int numCorrectInstances

### numIncorrectInstances

    int numIncorrectInstances

### numConfidenceCorrect

    int numConfidenceCorrect

### numFalsePositive

    int numFalsePositive

### numFalseNegative

    int numFalseNegative

Class cc.mallet.classify.DecisionTree extends Classifier implements Serializable

serialVersionUID: 1L

Serialized Fields

### root

    DecisionTree.Node root

### addFeaturesClassEntropyThreshold

    double addFeaturesClassEntropyThreshold

Class cc.mallet.classify.DecisionTree.Node extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

### featureIndex

    int featureIndex

### infoGain

    double infoGain

### ilist

    InstanceList ilist

### dictionary

    Alphabet dictionary

### labelEntropy

    double labelEntropy

### labeling

    Labeling labeling

### parent

    DecisionTree.Node parent

### child0

    DecisionTree.Node child0

### child1

    DecisionTree.Node child1

### name

    java.lang.String name

Class cc.mallet.classify.MaxEnt extends Classifier implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### parameters

    double[] parameters

### defaultFeatureIndex

    int defaultFeatureIndex

### featureSelection

    FeatureSelection featureSelection

### perClassFeatureSelection

    FeatureSelection[] perClassFeatureSelection

Class cc.mallet.classify.MaxEntGETrainer extends ClassifierTrainer<MaxEnt> implements Serializable

serialVersionUID: 1L

Serialized Fields

### numIterations

    int numIterations

### temperature

    double temperature

### gaussianPriorVariance

    double gaussianPriorVariance

### constraintsFile

    java.lang.String constraintsFile

### constraints

    java.util.HashMap<K,V> constraints

### trainingList

    InstanceList trainingList

### classifier

    MaxEnt classifier

### ge

    MaxEntOptimizableByGE ge

### opt

    Optimizer opt

Class cc.mallet.classify.MaxEntL1Trainer extends MaxEntTrainer implements Serializable

serialVersionUID: 1L

Serialized Fields

### l1Weight

    double l1Weight

Class cc.mallet.classify.MaxEntTrainer extends ClassifierTrainer<MaxEnt> implements Serializable

Serialized Fields

### numIterations

    int numIterations

### gaussianPriorVariance

    double gaussianPriorVariance

### l1Weight

    double l1Weight

### maximizerClass

    java.lang.Class<T> maximizerClass

### trainingSet

    InstanceList trainingSet

### initialClassifier

    MaxEnt initialClassifier

### optimizable

    MaxEntOptimizableByLabelLikelihood optimizable

### optimizer

    Optimizer optimizer

Class cc.mallet.classify.MCMaxEnt extends Classifier implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### parameters

    double[] parameters

### defaultFeatureIndex

    int defaultFeatureIndex

### featureSelection

    FeatureSelection featureSelection

### perClassFeatureSelection

    FeatureSelection[] perClassFeatureSelection

Class cc.mallet.classify.MCMaxEntTrainer extends ClassifierTrainer<MCMaxEnt> implements Serializable

Serialized Fields

### numGetValueCalls

    int numGetValueCalls

### numGetValueGradientCalls

    int numGetValueGradientCalls

### numIterations

    int numIterations

### usingMultiConditionalTraining

    boolean usingMultiConditionalTraining

### usingHyperbolicPrior

    boolean usingHyperbolicPrior

### gaussianPriorVariance

    double gaussianPriorVariance

### hyperbolicPriorSlope

    double hyperbolicPriorSlope

### hyperbolicPriorSharpness

    double hyperbolicPriorSharpness

### maximizerClass

    java.lang.Class<T> maximizerClass

### generativeWeighting

    double generativeWeighting

### mt

    cc.mallet.classify.MCMaxEntTrainer.MaximizableTrainer mt

### initialClassifier

    MCMaxEnt initialClassifier

Class cc.mallet.classify.NaiveBayes extends Classifier implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prior

    Multinomial.Logged prior

### p

    Multinomial.Logged[] p

Class cc.mallet.classify.NaiveBayesTrainer extends ClassifierTrainer<NaiveBayes> implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### featureEstimator

    Multinomial.Estimator featureEstimator

### priorEstimator

    Multinomial.Estimator priorEstimator

### me

    Multinomial.Estimator[] me

### pe

    Multinomial.Estimator pe

### docLengthNormalization

    double docLengthNormalization

### classifier

    NaiveBayes classifier

### instancePipe

    Pipe instancePipe

### dataAlphabet

    Alphabet dataAlphabet

### targetAlphabet

    Alphabet targetAlphabet

Class cc.mallet.classify.RankMaxEnt extends MaxEnt implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.classify.RankMaxEntTrainer extends MaxEntTrainer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.classify.Trial extends java.util.ArrayList<Classification> implements Serializable

Serialized Fields

### classifier

    Classifier classifier

Class cc.mallet.classify.Winnow extends Classifier implements Serializable

Serialized Fields

### weights

    double[][] weights

  array of weights, one for each feature, initialized to 1

### theta

    double theta

  threshold for sum of wi*xi in formulating guess

Package cc.mallet.classify.evaluate

Class cc.mallet.classify.evaluate.Graph extends java.awt.Canvas implements Serializable

Serialized Fields

### top

    int top

### bottom

    int bottom

### left

    int left

### right

    int right

### titleHeight

    int titleHeight

### labelWidth

    int labelWidth

### fm

    java.awt.FontMetrics fm

### padding

    int padding

### title

    java.lang.String title

### xLabel

    java.lang.String xLabel

### yLabel

    java.lang.String yLabel

### xLabelHeight

    int xLabelHeight

### yLabelWidth

    int yLabelWidth

### min

    int min

### max

    int max

### xmin

    int xmin

### xmax

    int xmax

### legend

    Graph.Legend legend

### items

    java.util.Vector<E> items

Class cc.mallet.classify.evaluate.Graph2 extends Graph implements Serializable

Serialized Fields

### increment

    int increment

### position

    int position

Package cc.mallet.cluster

Class cc.mallet.cluster.Clusterer extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### instancePipe

    Pipe instancePipe

Class cc.mallet.cluster.Clustering extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### numLabels

    int numLabels

### labels

    int[] labels

### instances

    InstanceList instances

Class cc.mallet.cluster.Clusterings extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

### clusterings

    Clustering[] clusterings

Class cc.mallet.cluster.GreedyAgglomerative extends HillClimbingClusterer implements Serializable

serialVersionUID: 1L

Serialized Fields

### stoppingThreshold

    double stoppingThreshold

  Converged when merge score is below this value.

### converged

    boolean converged

  True if should stop clustering.

### scoreCache

    PairwiseMatrix scoreCache

  Cache for calls to `NeighborhoodEvaluator`. In some experiments, reduced running time by nearly half.

Class cc.mallet.cluster.GreedyAgglomerativeByDensity extends GreedyAgglomerative implements Serializable

serialVersionUID: 1L

Serialized Fields

### doPostConvergenceMerges

    boolean doPostConvergenceMerges

  If true, perform greedy agglomerative clustering on the clusters at the end of convergence. This may alleviate the greediness of the byDensity clustering algorithm.

### unclusteredInstances

    gnu.trove.TIntArrayList unclusteredInstances

  Integers representing the Instance indices that have not yet been placed in a cluster.

### instanceBeingClustered

    int instanceBeingClustered

  Index of an Instance in the cluster currently being created.

### random

    java.util.Random random

  Randomness to order instanceBeingClustered.

Class cc.mallet.cluster.HillClimbingClusterer extends KBestClusterer implements Serializable

Serialized Fields

### evaluator

    NeighborEvaluator evaluator

Class cc.mallet.cluster.KBestClusterer extends Clusterer implements Serializable

Class cc.mallet.cluster.KMeans extends Clusterer implements Serializable

serialVersionUID: 1L

Serialized Fields

### randinator

    java.util.Random randinator

### metric

    Metric metric

### numClusters

    int numClusters

### emptyAction

    int emptyAction

### clusterMeans

    java.util.ArrayList<E> clusterMeans

Class cc.mallet.cluster.Record extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

### fieldAlph

    Alphabet fieldAlph

### valueAlph

    Alphabet valueAlph

### field2values

    gnu.trove.TIntObjectHashMap<V> field2values

Package cc.mallet.cluster.neighbor_evaluator

Class cc.mallet.cluster.neighbor_evaluator.AgglomerativeNeighbor extends Neighbor implements Serializable

serialVersionUID: 1L

Serialized Fields

### newCluster

    int[] newCluster

  Instance indices in the new, merged cluster.

### oldClusters

    int[][] oldClusters

  Instance indices in the old, pre-merged clusters.

Class cc.mallet.cluster.neighbor_evaluator.ClassifyingNeighborEvaluator extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### classifier

    Classifier classifier

  The Classifier used to assign a score to each `Neighbor`.

### scoringLabel

    java.lang.String scoringLabel

  The label corresponding to a positive instance (e.g. "YES").

Class cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator extends ClassifyingNeighborEvaluator implements Serializable

serialVersionUID: 1L

Serialized Fields

### singleLink

    boolean singleLink

  If single link is true, then the score of clusters A and B is the score of the link between the two medoids.

### combiningStrategy

    MedoidEvaluator.CombiningStrategy combiningStrategy

  How to combine a set of pairwise scores (e.g. mean, max, ...)... [currently not supported in this class]

### mergeFirst

    boolean mergeFirst

  If true, score all edges involved in a merge. If false, only score the edges that croess the boundaries of the clusters being merged.

### scoreCache

    PairwiseMatrix scoreCache

  Cache for calls to getScore. In some experiments, reduced running time by nearly half.

Class cc.mallet.cluster.neighbor_evaluator.Neighbor extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### original

    Clustering original

### modified

    Clustering modified

### alphabet

    Alphabet alphabet

Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator extends ClassifyingNeighborEvaluator implements Serializable

serialVersionUID: 1L

Serialized Fields

### combiningStrategy

    PairwiseEvaluator.CombiningStrategy combiningStrategy

  How to combine a set of pairwise scores (e.g. mean, max, ...).

### mergeFirst

    boolean mergeFirst

  If true, score all edges involved in a merge. If false, only score the edges that croess the boundaries of the clusters being merged.

### scoreCache

    PairwiseMatrix scoreCache

  Cache for calls to getScore. In some experiments, reduced running time by nearly half.

Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Average extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Maximum extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Minimum extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.cluster.neighbor_evaluator.RandomEvaluator extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### random

    Randoms random

Class cc.mallet.cluster.neighbor_evaluator.RankingNeighborEvaluator extends ClassifyingNeighborEvaluator implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Package cc.mallet.cluster.tui

Class cc.mallet.cluster.tui.Clusterings2Clusterer.ClusteringPipe extends Pipe implements Serializable

serialVersionUID: 1L

Serialized Fields

### exactMatchFields

    int[] exactMatchFields

### approxMatchFields

    int[] approxMatchFields

### substringMatchFields

    int[] substringMatchFields

### approxMatchThreshold

    double approxMatchThreshold

Package cc.mallet.cluster.util

Class cc.mallet.cluster.util.PairwiseMatrix extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

### vals

    double[][] vals

Package cc.mallet.extract

Class cc.mallet.extract.BIOTokenizationFilter extends java.lang.Object implements Serializable

serialVersionUID: -8726127297313150023L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.extract.BIOTokenizationFilterWithTokenIndices extends BIOTokenizationFilter implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.extract.ConfidenceTokenizationFilter extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### confidenceEstimator

    ExtractionConfidenceEstimator confidenceEstimator

### underlyingFilter

    TokenizationFilter underlyingFilter

Class cc.mallet.extract.CRFExtractor extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### crf

    CRF crf

### tokenizationPipe

    Pipe tokenizationPipe

### featurePipe

    Pipe featurePipe

### backgroundTag

    java.lang.String backgroundTag

### filter

    TokenizationFilter filter

Class cc.mallet.extract.DefaultTokenizationFilter extends java.lang.Object implements Serializable

Class cc.mallet.extract.DocumentExtraction extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### input

    Tokenization input

### predictedLabels

    Sequence<E> predictedLabels

### target

    LabelSequence target

### extractedSpans

    LabeledSpans extractedSpans

### targetSpans

    LabeledSpans targetSpans

### document

    java.lang.Object document

### backgroundTag

    Label backgroundTag

### name

    java.lang.String name

Class cc.mallet.extract.LabeledSpan extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### span

    Span span

### label

    Label label

### isBackground

    boolean isBackground

### confidence

    double confidence

Class cc.mallet.extract.LabeledSpans extends ArrayListSequence implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### document

    java.lang.Object document

Class cc.mallet.extract.StringSpan extends Token implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### document

    java.lang.CharSequence document

### start

    int start

### end

    int end

Class cc.mallet.extract.StringTokenization extends TokenSequence implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### document

    java.lang.CharSequence document

Class cc.mallet.extract.TransducerExtractionConfidenceEstimator extends ExtractionConfidenceEstimator implements Serializable

Serialized Fields

### confidenceEstimator

    TransducerConfidenceEstimator confidenceEstimator

### featurePipe

    Pipe featurePipe

Package cc.mallet.extract.pipe

Class cc.mallet.extract.pipe.TokenSequence2Tokenization extends Pipe implements Serializable

Package cc.mallet.fst

Class cc.mallet.fst.CRF extends Transducer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### inputAlphabet

    Alphabet inputAlphabet

### outputAlphabet

    Alphabet outputAlphabet

### states

    java.util.ArrayList<E> states

### initialStates

    java.util.ArrayList<E> initialStates

### name2state

    java.util.HashMap<K,V> name2state

### parameters

    CRF.Factors parameters

### globalFeatureSelection

    FeatureSelection globalFeatureSelection

### featureSelections

    FeatureSelection[] featureSelections

### featureInducers

    java.util.ArrayList<E> featureInducers

### weightsValueChangeStamp

    int weightsValueChangeStamp

### weightsStructureChangeStamp

    int weightsStructureChangeStamp

### cachedNumParametersStamp

    int cachedNumParametersStamp

### numParameters

    int numParameters

Class cc.mallet.fst.CRF.Factors extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### weightAlphabet

    Alphabet weightAlphabet

### weights

    SparseVector[] weights

### defaultWeights

    double[] defaultWeights

### weightsFrozen

    boolean[] weightsFrozen

### initialWeights

    double[] initialWeights

### finalWeights

    double[] finalWeights

Class cc.mallet.fst.CRF.State extends Transducer.State implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### name

    java.lang.String name

### index

    int index

### destinationNames

    java.lang.String[] destinationNames

### destinations

    CRF.State[] destinations

### weightsIndices

    int[][] weightsIndices

### labels

    java.lang.String[] labels

### crf

    CRF crf

Class cc.mallet.fst.CRF.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### source

    CRF.State source

### index

    int index

### nextIndex

    int nextIndex

### weights

    double[] weights

### input

    FeatureVector input

### crf

    CRF crf

Class cc.mallet.fst.CRFOptimizableByBatchLabelLikelihood extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### crf

    CRF crf

### trainingSet

    InstanceList trainingSet

### numBatches

    int numBatches

### expectations

    java.util.List<E> expectations

### constraints

    CRF.Factors constraints

### cachedValue

    double[] cachedValue

### cachedGradient

    java.util.List<E> cachedGradient

### usingHyperbolicPrior

    boolean usingHyperbolicPrior

### gaussianPriorVariance

    double gaussianPriorVariance

### hyperbolicPriorSlope

    double hyperbolicPriorSlope

### hyperbolicPriorSharpness

    double hyperbolicPriorSharpness

Class cc.mallet.fst.CRFOptimizableByLabelLikelihood extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### trainingSet

    InstanceList trainingSet

### cachedValue

    double cachedValue

### cachedGradient

    double[] cachedGradient

### infiniteValues

    java.util.BitSet infiniteValues

### crf

    CRF crf

### constraints

    CRF.Factors constraints

### expectations

    CRF.Factors expectations

### cachedValueWeightsStamp

    int cachedValueWeightsStamp

### cachedGradientWeightsStamp

    int cachedGradientWeightsStamp

### usingHyperbolicPrior

    boolean usingHyperbolicPrior

### gaussianPriorVariance

    double gaussianPriorVariance

### hyperbolicPriorSlope

    double hyperbolicPriorSlope

### hyperbolicPriorSharpness

    double hyperbolicPriorSharpness

Class cc.mallet.fst.CRFTrainerByValueGradients.OptimizableCRF extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### trainingSet

    InstanceList trainingSet

### cachedValue

    double cachedValue

### cachedGradie

    double[] cachedGradie

### infiniteValues

    java.util.BitSet infiniteValues

### crf

    CRF crf

### opts

    Optimizable.ByGradientValue[] opts

Class cc.mallet.fst.FeatureTransducer extends Transducer implements Serializable

serialVersionUID: 1L

Serialized Fields

### inputAlphabet

    Alphabet inputAlphabet

### outputAlphabet

    Alphabet outputAlphabet

### states

    java.util.ArrayList<E> states

### initialStates

    java.util.ArrayList<E> initialStates

### name2state

    java.util.HashMap<K,V> name2state

### initialStateCounts

    Multinomial.Estimator initialStateCounts

### finalStateCounts

    Multinomial.Estimator finalStateCounts

### trainable

    boolean trainable

Class cc.mallet.fst.FeatureTransducer.State extends Transducer.State implements Serializable

serialVersionUID: 1L

Serialized Fields

### name

    java.lang.String name

### index

    int index

### initialWeight

    double initialWeight

### finalWeight

    double finalWeight

### transitions

    FeatureTransducer.Transition[] transitions

### input2transitions

    gnu.trove.TIntObjectHashMap<V> input2transitions

### transitionCounts

    Multinomial.Estimator transitionCounts

### transducer

    FeatureTransducer transducer

Class cc.mallet.fst.FeatureTransducer.TransitionIterator extends Transducer.TransitionIterator implements Serializable

Serialized Fields

### index

    int index

### transition

    FeatureTransducer.Transition transition

### source

    FeatureTransducer.State source

### input

    int input

Class cc.mallet.fst.HMM extends Transducer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### inputAlphabet

    Alphabet inputAlphabet

### outputAlphabet

    Alphabet outputAlphabet

### states

    java.util.ArrayList<E> states

### initialStates

    java.util.ArrayList<E> initialStates

### name2state

    java.util.HashMap<K,V> name2state

### transitionEstimator

    Multinomial.Estimator[] transitionEstimator

### emissionEstimator

    Multinomial.Estimator[] emissionEstimator

### initialEstimator

    Multinomial.Estimator initialEstimator

### transitionMultinomial

    Multinomial[] transitionMultinomial

### emissionMultinomial

    Multinomial[] emissionMultinomial

### initialMultinomial

    Multinomial initialMultinomial

Class cc.mallet.fst.HMM.State extends Transducer.State implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### name

    java.lang.String name

### index

    int index

### initialWeight

    double initialWeight

### finalWeight

    double finalWeight

### destinationNames

    java.lang.String[] destinationNames

### destinations

    HMM.State[] destinations

### labels

    java.lang.String[] labels

### hmm

    HMM hmm

Class cc.mallet.fst.HMM.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### source

    HMM.State source

### index

    int index

### nextIndex

    int nextIndex

### inputPos

    int inputPos

### weights

    double[] weights

### inputSequence

    FeatureSequence inputSequence

### inputFeature

    java.lang.Integer inputFeature

### hmm

    HMM hmm

Class cc.mallet.fst.MaxLatticeDefault.Factory extends MaxLatticeFactory implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.fst.MaxLatticeFactory extends java.lang.Object implements Serializable

Class cc.mallet.fst.MEMM extends CRF implements Serializable

Class cc.mallet.fst.MEMM.State extends CRF.State implements Serializable

Serialized Fields

### trainingSet

    InstanceList trainingSet

Class cc.mallet.fst.MEMM.TransitionIterator extends CRF.TransitionIterator implements Serializable

Serialized Fields

### sum

    double sum

Class cc.mallet.fst.MEMMTrainer.MEMMOptimizableByLabelLikelihood extends CRFOptimizableByLabelLikelihood implements Serializable

Serialized Fields

### infiniteValues

    java.util.BitSet infiniteValues

Class cc.mallet.fst.SimpleTagger.SimpleTaggerSentence2FeatureVectorSequence extends Pipe implements Serializable

serialVersionUID: -2059308802200728625L

Class cc.mallet.fst.SumLatticeBeam.Factory extends SumLatticeFactory implements Serializable

Serialized Fields

### bw

    int bw

Class cc.mallet.fst.SumLatticeDefault.Factory extends SumLatticeFactory implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.fst.SumLatticeFactory extends java.lang.Object implements Serializable

Class cc.mallet.fst.SumLatticeScaling.Factory extends SumLatticeFactory implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.fst.Transducer extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### sumLatticeFactory

    SumLatticeFactory sumLatticeFactory

### maxLatticeFactory

    MaxLatticeFactory maxLatticeFactory

### inputPipe

    Pipe inputPipe

  A pipe that should produce a Sequence in the "data" slot, (and possibly one in the "target" slot also

### outputPipe

    Pipe outputPipe

  A pipe that should expect the Transducer's output sequence in the "target" slot, and should produce something printable in the "source" slot that indicates the results of transduction.

Class cc.mallet.fst.Transducer.State extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.fst.Transducer.TransitionIterator extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Package cc.mallet.fst.confidence

Class cc.mallet.fst.confidence.ConstrainedForwardBackwardConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable

serialVersionUID: 1L

Class cc.mallet.fst.confidence.GammaAverageConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable

Serialized Fields

### string2stateIndex

    java.util.HashMap<K,V> string2stateIndex

Class cc.mallet.fst.confidence.GammaProductConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable

Serialized Fields

### string2stateIndex

    java.util.HashMap<K,V> string2stateIndex

Class cc.mallet.fst.confidence.MaxEntConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable

Serialized Fields

### meTrainer

    MaxEntTrainer meTrainer

### meClassifier

    MaxEnt meClassifier

### pipe

    Pipe pipe

### correct

    java.lang.String correct

### incorrect

    java.lang.String incorrect

Class cc.mallet.fst.confidence.RandomConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable

Serialized Fields

### generator

    java.util.Random generator

Class cc.mallet.fst.confidence.TransducerConfidenceEstimator extends java.lang.Object implements Serializable

Serialized Fields

### model

    Transducer model

### segmentConfidences

    java.util.Vector<E> segmentConfidences

Package cc.mallet.fst.semi_supervised

Class cc.mallet.fst.semi_supervised.CRFOptimizableByEntropyRegularization extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

### cachedValueWeightsStamp

    int cachedValueWeightsStamp

### cachedGradientWeightsStamp

    int cachedGradientWeightsStamp

### expectations

    CRF.Factors expectations

### incrementor

    Transducer.Incrementor incrementor

### data

    InstanceList data

### crf

    CRF crf

### scalingFactor

    double scalingFactor

### cachedValue

    double cachedValue

### cachedGradient

    double[] cachedGradient

Class cc.mallet.fst.semi_supervised.CRFOptimizableByGECriteria extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

### data

    InstanceList data

### numThreads

    int numThreads

### cachedValueWeightsStamp

    int cachedValueWeightsStamp

### cachedGradientWeightsStamp

    int cachedGradientWeightsStamp

### crf

    CRF crf

### geCriteria

    GECriteria geCriteria

### gradient

    CRF.Factors gradient

### incrementor

    Transducer.Incrementor incrementor

### cachedValue

    double cachedValue

### cachedGradient

    double[] cachedGradient

### priorVariance

    double priorVariance

Package cc.mallet.fst.tests

Class cc.mallet.fst.tests.TestCRF.TestCRF2String extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.fst.tests.TestCRF.TestCRFTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.fst.tests.TestMEMM.TestMEMM2String extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException

  Throws:
    `java.io.IOException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.fst.tests.TestMEMM.TestMEMMTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException

  Throws:
    `java.io.IOException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Package cc.mallet.grmm.examples

Class cc.mallet.grmm.examples.CrossTemplate1 extends ACRF.SequenceTemplate implements Serializable

Serialized Fields

### lvl1

    int lvl1

### lvl2

    int lvl2

Package cc.mallet.grmm.inference

Class cc.mallet.grmm.inference.AbstractBeliefPropagation extends AbstractInferencer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### normalizeBeliefs

    boolean normalizeBeliefs

### threshold

    double threshold

### useCaching

    boolean useCaching

### messager

    AbstractBeliefPropagation.MessageStrategy messager

Class cc.mallet.grmm.inference.AbstractBeliefPropagation.MaxProductMessageStrategy extends AbstractBeliefPropagation.AbstractMessageStrategy implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.grmm.inference.AbstractBeliefPropagation.SumProductMessageStrategy extends AbstractBeliefPropagation.AbstractMessageStrategy implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### damping

    double damping

Class cc.mallet.grmm.inference.AbstractInferencer extends java.lang.Object implements Serializable

serialVersionUID: 1L

Class cc.mallet.grmm.inference.BruteForceInferencer extends AbstractInferencer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.grmm.inference.JunctionTreeInferencer extends AbstractInferencer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### inLogSpace

    boolean inLogSpace

### propagator

    cc.mallet.grmm.inference.JunctionTreePropagation propagator

Class cc.mallet.grmm.inference.JunctionTreePropagation.MaxProductMessageStrategy extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.grmm.inference.JunctionTreePropagation.SumProductMessageStrategy extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.grmm.inference.LoopyBP extends AbstractBeliefPropagation implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### maxIter

    int maxIter

### rand

    java.util.Random rand

Class cc.mallet.grmm.inference.ResidualBP extends AbstractBeliefPropagation implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### maxIter

    int maxIter

### rand

    java.util.Random rand

Class cc.mallet.grmm.inference.SamplingInferencer extends AbstractInferencer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### N

    int N

### sampler

    Sampler sampler

Class cc.mallet.grmm.inference.TreeBP extends AbstractBeliefPropagation implements Serializable

Class cc.mallet.grmm.inference.TRP extends AbstractBeliefPropagation implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### factory

    TRP.TreeFactory factory

### terminator

    TRP.TerminationCondition terminator

### random

    java.util.Random random

Class cc.mallet.grmm.inference.TRP.AlmostRandomTreeFactory extends java.lang.Object implements Serializable

serialVersionUID: -7461763414516915264L

Class cc.mallet.grmm.inference.TRP.ConvergenceTerminator extends java.lang.Object implements Serializable

Serialized Fields

### delta

    double delta

Class cc.mallet.grmm.inference.TRP.DefaultConvergenceTerminator extends java.lang.Object implements Serializable

Serialized Fields

### cterminator

    TRP.ConvergenceTerminator cterminator

### iterminator

    TRP.IterationTerminator iterminator

### msg

    java.lang.String msg

Class cc.mallet.grmm.inference.TRP.IterationTerminator extends java.lang.Object implements Serializable

Serialized Fields

### current

    int current

### max

    int max

Class cc.mallet.grmm.inference.TRP.TreeListFactory extends java.lang.Object implements Serializable

Serialized Fields

### lst

    java.util.List<E> lst

### it

    java.util.Iterator<E> it

Class cc.mallet.grmm.inference.VariableElimination extends AbstractInferencer implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Package cc.mallet.grmm.inference.gbp

Class cc.mallet.grmm.inference.gbp.ParentChildGBP extends AbstractInferencer implements Serializable

Serialized Fields

### regioner

    RegionGraphGenerator regioner

### sender

    MessageStrategy sender

### useInertia

    boolean useInertia

### inertiaWeight

    double inertiaWeight

### oldMessages

    cc.mallet.grmm.inference.gbp.MessageArray oldMessages

### newMessages

    cc.mallet.grmm.inference.gbp.MessageArray newMessages

### rg

    cc.mallet.grmm.inference.gbp.RegionGraph rg

### mdl

    FactorGraph mdl

Package cc.mallet.grmm.learning

Class cc.mallet.grmm.learning.ACRF extends java.lang.Object implements Serializable

serialVersionUID: 2865175696692468236L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

Serialized Fields

### templates

    ACRF.Template[] templates

### fixedPtls

    java.util.List<E> fixedPtls

### graphProcessor

    ACRF.GraphPostProcessor graphProcessor

### inputAlphabet

    Alphabet inputAlphabet

### globalInferencer

    Inferencer globalInferencer

### viterbi

    Inferencer viterbi

### defaultFeatureIndex

    int defaultFeatureIndex

### inputPipe

    Pipe inputPipe

### cacheUnrolledGraphs

    boolean cacheUnrolledGraphs

### gaussianPriorVariance

    double gaussianPriorVariance

### doSizeScale

    boolean doSizeScale

Class cc.mallet.grmm.learning.ACRF.BigramTemplate extends ACRF.SequenceTemplate implements Serializable

serialVersionUID: 8944142287103225874L

Serialized Fields

### factor

    int factor

Class cc.mallet.grmm.learning.ACRF.FixedFactorTemplate extends ACRF.Template implements Serializable

Class cc.mallet.grmm.learning.ACRF.MaximizableACRF extends java.lang.Object implements Serializable

Serialized Fields

### trainData

    InstanceList trainData

### cachedValue

    double cachedValue

### cachedGradient

    double[] cachedGradient

### infiniteValues

    java.util.BitSet infiniteValues

### cachedValueStale

    boolean cachedValueStale

### cachedGradientStale

    boolean cachedGradientStale

### numParameters

    int numParameters

### totalNodes

    int totalNodes

### inferencer

    Inferencer inferencer

### constraints

    SparseVector[][] constraints

### expectations

    SparseVector[][] expectations

### defaultConstraints

    SparseVector[] defaultConstraints

### defaultExpectations

    SparseVector[] defaultExpectations

### gradCallNo

    int gradCallNo

Class cc.mallet.grmm.learning.ACRF.PairwiseFactorTemplate extends ACRF.SequenceTemplate implements Serializable

serialVersionUID: 1L

Serialized Fields

### factor0

    int factor0

### factor1

    int factor1

Class cc.mallet.grmm.learning.ACRF.SequenceTemplate extends ACRF.Template implements Serializable

Class cc.mallet.grmm.learning.ACRF.Template extends java.lang.Object implements Serializable

serialVersionUID: -727618747254644076L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

Serialized Fields

### unsupportedWeightsAdded

    boolean unsupportedWeightsAdded

### weights

    SparseVector[] weights

### assignmentsPresent

    java.util.BitSet assignmentsPresent

### supportedOnly

    boolean supportedOnly

### index

    int index

### defaultWeights

    SparseVector defaultWeights

### trainable

    boolean trainable

Class cc.mallet.grmm.learning.ACRF.UnigramTemplate extends ACRF.SequenceTemplate implements Serializable

serialVersionUID: 1L

Serialized Fields

### factor

    int factor

Class cc.mallet.grmm.learning.ACRF.UnrolledGraph extends UndirectedModel implements Serializable

Serialized Fields

### allVars

    java.util.List<E> allVars

  Array of Variables containing all nodes in model.

### cliques

    java.util.List<E> cliques

  Array containing all instantiated cliques (UnrolledClique) in the model.

### numSlices

    int numSlices

  The number of Label objects in each Labels object

### isCached

    boolean isCached

### instance

    Instance instance

### fvs

    FeatureVectorSequence fvs

### assignment

    Assignment assignment

### outputAlphabets

    LabelAlphabet[] outputAlphabets

### acrf

    ACRF acrf

### allTemplates

    java.util.List<E> allTemplates

### isFactorsAdded

    boolean isFactorsAdded

### uvsMap

    gnu.trove.THashMap<K,V> uvsMap

### lastResids

    double[] lastResids

### observedVars

    gnu.trove.TObjectIntHashMap<K> observedVars

Class cc.mallet.grmm.learning.ACRF.UnrolledVarSet extends HashVarSet implements Serializable

Serialized Fields

### tmpl

    ACRF.Template tmpl

### fv

    FeatureVector fv

### vars

    Variable[] vars

### factor

    Factor factor

### graph

    ACRF.UnrolledGraph graph

### lastChange

    double lastChange

Class cc.mallet.grmm.learning.GenericAcrfData2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### labelDicts

    java.util.ArrayList<E> labelDicts

### numLabels

    int numLabels

### includeTokenText

    boolean includeTokenText

### textFeaturePrefix

    java.lang.String textFeaturePrefix

### featuresIncludeToken

    boolean featuresIncludeToken

### labelsAtEnd

    boolean labelsAtEnd

Package cc.mallet.grmm.learning.extract

Class cc.mallet.grmm.learning.extract.ACRFExtractor extends java.lang.Object implements Serializable

Serialized Fields

### acrf

    ACRF acrf

### tokPipe

    Pipe tokPipe

### featurePipe

    Pipe featurePipe

### slice

    int slice

### backgroundTag

    java.lang.String backgroundTag

### filter

    TokenizationFilter filter

Package cc.mallet.grmm.learning.templates

Class cc.mallet.grmm.learning.templates.SimilarTokensTemplate extends ACRF.SequenceTemplate implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### factor

    int factor

### distinguishEndpts

    boolean distinguishEndpts

### wordFeaturesOnly

    boolean wordFeaturesOnly

### excludeAdjacent

    boolean excludeAdjacent

### binner

    SimilarTokensTemplate.FeatureVectorBinner binner

Class cc.mallet.grmm.learning.templates.SimilarTokensTemplate.CapWordsBinner extends SimilarTokensTemplate.WordFeatureBinner implements Serializable

Class cc.mallet.grmm.learning.templates.SimilarTokensTemplate.WordFeatureBinner extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### findWordPtn1

    java.util.regex.Pattern findWordPtn1

### findWordPtn2

    java.util.regex.Pattern findWordPtn2

### findWordExcludePtn

    java.util.regex.Pattern findWordExcludePtn

### wordIncludePattern

    java.util.regex.Pattern wordIncludePattern

Package cc.mallet.grmm.types

Class cc.mallet.grmm.types.AbstractFactor extends java.lang.Object implements Serializable

Serialized Fields

### vars

    VarSet vars

Class cc.mallet.grmm.types.AbstractTableFactor extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### universe

    Universe universe

  Maps all of the Variable objects of this distribution to an integer that says which dimension in the probs matrix correspands to that var.

### vars

    VarSet vars

### numVars

    int numVars

  Number of variables in this potential.

### probs

    Matrix probs

Class cc.mallet.grmm.types.Assignment extends AbstractFactor implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### scale

    double scale

Class cc.mallet.grmm.types.BetaFactor extends AbstractFactor implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException,
                             java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

Class cc.mallet.grmm.types.BidirectionalIntObjectMap extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### map

    gnu.trove.TObjectIntHashMap<K> map

### entries

    java.util.ArrayList<E> entries

### growthStopped

    boolean growthStopped

Class cc.mallet.grmm.types.BinaryUnaryFactor extends AbstractFactor implements Serializable

Serialized Fields

### theta1

    Variable theta1

### theta2

    Variable theta2

### var

    Variable var

Class cc.mallet.grmm.types.BoltzmannPairFactor extends AbstractFactor implements Serializable

Serialized Fields

### sigma

    Variable sigma

### x1

    Variable x1

### x2

    Variable x2

### xs

    VarSet xs

Class cc.mallet.grmm.types.BoltzmannUnaryFactor extends AbstractFactor implements Serializable

Serialized Fields

### theta

    Variable theta

### var

    Variable var

Class cc.mallet.grmm.types.ConstantFactor extends AbstractFactor implements Serializable

serialVersionUID: -2934945791792969816L

Serialized Fields

### c

    double c

Class cc.mallet.grmm.types.CPT extends java.lang.Object implements Serializable

Serialized Fields

### subFactor

    DiscreteFactor subFactor

### parents

    VarSet parents

### child

    Variable child

Class cc.mallet.grmm.types.DirectedModel extends FactorGraph implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### allCpts

    java.util.Map<K,V> allCpts

### graph

    org._3pq.jgrapht.DirectedGraph graph

Class cc.mallet.grmm.types.FactorGraph extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### factors

    java.util.List<E> factors

### clique2ptl

    gnu.trove.THashMap<K,V> clique2ptl

  Set of clique potential for this graph. Ordinarily will map Cliques to DiscretePotentials.

### universe

    Universe universe

### projectionMap

    gnu.trove.TIntIntHashMap projectionMap

### my2global

    int[] my2global

### factorsAlphabet

    BidirectionalIntObjectMap factorsAlphabet

### numNodes

    int numNodes

Class cc.mallet.grmm.types.HashVarSet extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### verts

    gnu.trove.THashSet<E> verts

### vertsList

    java.util.ArrayList<E> vertsList

Class cc.mallet.grmm.types.ListVarSet extends java.util.AbstractSet implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### cachedWeight

    int cachedWeight

Class cc.mallet.grmm.types.LogTableFactor extends AbstractTableFactor implements Serializable

Class cc.mallet.grmm.types.NormalFactor extends AbstractFactor implements Serializable

Serialized Fields

### mean

    no.uib.cipr.matrix.Vector mean

### variance

    no.uib.cipr.matrix.Matrix variance

Class cc.mallet.grmm.types.PottsTableFactor extends AbstractFactor implements Serializable

Serialized Fields

### alpha

    Variable alpha

### xs

    VarSet xs

Class cc.mallet.grmm.types.SkeletonFactor extends AbstractFactor implements Serializable

Class cc.mallet.grmm.types.TableFactor extends AbstractTableFactor implements Serializable

Class cc.mallet.grmm.types.UndirectedGrid extends UndirectedModel implements Serializable

Serialized Fields

### vars

    Variable[][] vars

### width

    int width

### height

    int height

Class cc.mallet.grmm.types.UndirectedModel extends FactorGraph implements Serializable

Serialized Fields

### edges

    java.util.Set<E> edges

Class cc.mallet.grmm.types.UniformFactor extends AbstractFactor implements Serializable

Serialized Fields

### var

    Variable var

### min

    double min

### max

    double max

### val

    double val

Class cc.mallet.grmm.types.UniNormalFactor extends AbstractFactor implements Serializable

Serialized Fields

### var

    Variable var

### mean

    double mean

### variance

    double variance

Class cc.mallet.grmm.types.Universe extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### variableAlphabet

    BidirectionalIntObjectMap variableAlphabet

Class cc.mallet.grmm.types.UnmodifiableVarSet extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.grmm.types.Variable extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### label

    java.lang.String label

### outcomes

    LabelAlphabet outcomes

### universe

    Universe universe

### index

    int index

Package cc.mallet.grmm.util

Class cc.mallet.grmm.util.LabelsAssignment extends Assignment implements Serializable

Serialized Fields

### id

    int id

### idx2var

    Variable[][] idx2var

### lblseq

    LabelsSequence lblseq

### var2label

    java.util.Map<K,V> var2label

Class cc.mallet.grmm.util.LabelsSequence2Assignment extends Pipe implements Serializable

Class cc.mallet.grmm.util.MIntInt2ObjectMap extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### backing

    gnu.trove.TIntObjectHashMap<V> backing

Class cc.mallet.grmm.util.RememberTokenizationPipe extends Pipe implements Serializable

Class cc.mallet.grmm.util.SliceLabelsSequence extends Pipe implements Serializable

Serialized Fields

### slice

    int slice

Package cc.mallet.optimize

Class cc.mallet.optimize.InvalidOptimizableException extends OptimizationException implements Serializable

Class cc.mallet.optimize.OptimizationException extends java.lang.RuntimeException implements Serializable

Package cc.mallet.pipe

Class cc.mallet.pipe.AddClassifierTokenPredictions extends Pipe implements Serializable

serialVersionUID: 1L

Serialized Fields

### m_predRanks2add

    int[] m_predRanks2add

### m_tokenClassifiers

    AddClassifierTokenPredictions.TokenClassifiers m_tokenClassifiers

### m_binary

    boolean m_binary

### m_inProduction

    boolean m_inProduction

### m_dataAlphabet

    Alphabet m_dataAlphabet

Class cc.mallet.pipe.AddClassifierTokenPredictions.TokenClassifiers extends Classifier implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### m_numCV

    int m_numCV

### m_randSeed

    int m_randSeed

### m_trainer

    ClassifierTrainer<C extends Classifier> m_trainer

### m_tokenClassifier

    Classifier m_tokenClassifier

### m_table

    java.util.HashMap<K,V> m_table

Class cc.mallet.pipe.Array2FeatureVector extends Pipe implements Serializable

Class cc.mallet.pipe.AugmentableFeatureVectorAddConjunctions extends Pipe implements Serializable

Serialized Fields

### conjunctions

    FeatureConjunction.List conjunctions

Class cc.mallet.pipe.AugmentableFeatureVectorLogScale extends Pipe implements Serializable

Class cc.mallet.pipe.BranchingPipe extends Pipe implements Serializable

Serialized Fields

### pipes

    java.util.ArrayList<E> pipes

  Deprecated.

Class cc.mallet.pipe.CharSequence2CharNGrams extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### n

    int n

### distinguishBorders

    boolean distinguishBorders

Class cc.mallet.pipe.CharSequence2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### lexer

    CharSequenceLexer lexer

Class cc.mallet.pipe.CharSequenceArray2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.CharSequenceLowercase extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.CharSequenceRemoveHTML extends Pipe implements Serializable

Class cc.mallet.pipe.CharSequenceRemoveUUEncodedBlocks extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.CharSequenceReplace extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### regex

    java.util.regex.Pattern regex

### replacement

    java.lang.String replacement

Class cc.mallet.pipe.CharSubsequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### regex

    java.util.regex.Pattern regex

### groupIndex

    int groupIndex

Class cc.mallet.pipe.Classification2ConfidencePredictingFeatureVector extends Pipe implements Serializable

Class cc.mallet.pipe.Csv2Array extends Pipe implements Serializable

Serialized Fields

### lexer

    CharSequenceLexer lexer

### numberFeatures

    int numberFeatures

Class cc.mallet.pipe.Csv2FeatureVector extends Pipe implements Serializable

Class cc.mallet.pipe.Directory2FileIterator extends Pipe implements Serializable

Serialized Fields

### fileFilter

    java.io.FileFilter fileFilter

### labelPattern

    java.util.regex.Pattern labelPattern

Class cc.mallet.pipe.FeatureCountPipe extends Pipe implements Serializable

serialVersionUID: 1L

Serialized Fields

### counter

    FeatureCounter counter

Class cc.mallet.pipe.FeatureSequence2AugmentableFeatureVector extends Pipe implements Serializable

Serialized Fields

### binary

    boolean binary

Class cc.mallet.pipe.FeatureSequence2FeatureVector extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### binary

    boolean binary

Class cc.mallet.pipe.FeatureSequenceConvolution extends Pipe implements Serializable

Class cc.mallet.pipe.FeatureValueString2FeatureVector extends Pipe implements Serializable

Class cc.mallet.pipe.FeatureVectorConjunctions extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.FeatureVectorSequence2FeatureVectors extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.Filename2CharSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.FilterEmptyFeatureVectors extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.Input2CharSequence extends Pipe implements Serializable

serialVersionUID: 2L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### encoding

    java.lang.String encoding

Class cc.mallet.pipe.InstanceListTrimFeaturesByCount extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### minCount

    int minCount

Class cc.mallet.pipe.LineGroupString2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### lexer

    CharSequenceLexer lexer

Class cc.mallet.pipe.MakeAmpersandXMLFriendly extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.Noop extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.Pipe extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

### readResolve

    public java.lang.Object readResolve()
                                 throws java.io.ObjectStreamException

  This gets called after readObject; it lets the object decide whether to return itself or return a previously read in version. We use a hashMap of instanceIds to determine if we have already read in this object.

  Throws:
    `java.io.ObjectStreamException`

Serialized Fields

### dataAlphabet

    Alphabet dataAlphabet

### targetAlphabet

    Alphabet targetAlphabet

### dataAlphabetResolved

    boolean dataAlphabetResolved

### targetAlphabetResolved

    boolean targetAlphabetResolved

### targetProcessing

    boolean targetProcessing

### instanceId

    java.rmi.dgc.VMID instanceId

Class cc.mallet.pipe.PipeException extends java.lang.Exception implements Serializable

Class cc.mallet.pipe.PrintInput extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

### stream

    java.io.PrintStream stream

Class cc.mallet.pipe.PrintInputAndTarget extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

Class cc.mallet.pipe.PrintTokenSequenceFeatures extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

Class cc.mallet.pipe.SaveDataInSource extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.SelectiveSGML2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### sgmlPattern

    java.util.regex.Pattern sgmlPattern

### lexer

    CharSequenceLexer lexer

### backgroundTag

    java.lang.String backgroundTag

### allowedTags

    java.util.Set<E> allowedTags

Class cc.mallet.pipe.SerialPipes extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### pipes

    java.util.ArrayList<E> pipes

Class cc.mallet.pipe.SGML2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### sgmlPattern

    java.util.regex.Pattern sgmlPattern

### lexer

    CharSequenceLexer lexer

### backgroundTag

    java.lang.String backgroundTag

### saveSource

    boolean saveSource

Class cc.mallet.pipe.SimpleTaggerSentence2StringTokenization extends SimpleTaggerSentence2TokenSequence implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.SimpleTaggerSentence2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### setTokensAsFeatures

    boolean setTokensAsFeatures

Class cc.mallet.pipe.SimpleTokenizer extends Pipe implements Serializable

serialVersionUID: 1L

Serialized Fields

### stoplist

    java.util.HashSet<E> stoplist

Class cc.mallet.pipe.SourceLocation2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### lexer

    CharSequenceLexer lexer

Class cc.mallet.pipe.StringAddNewLineDelimiter extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### delim

    java.lang.String delim

Class cc.mallet.pipe.StringList2FeatureSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialized Fields

### totalNanos

    long totalNanos

Class cc.mallet.pipe.SvmLight2FeatureVectorAndLabel extends Pipe implements Serializable

serialVersionUID: 1L

Class cc.mallet.pipe.Target2FeatureSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.Target2Label extends Pipe implements Serializable

serialVersionUID: -461155063551297878L

Class cc.mallet.pipe.Target2LabelSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.TargetRememberLastLabel extends Pipe implements Serializable

Serialized Fields

### backgroundLabel

    java.lang.String backgroundLabel

### offset

    boolean offset

Class cc.mallet.pipe.TargetStringToFeatures extends Pipe implements Serializable

serialVersionUID: 1L

Class cc.mallet.pipe.Token2FeatureVector extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### augmentable

    boolean augmentable

### binary

    boolean binary

Class cc.mallet.pipe.TokenSequence2FeatureSequence extends Pipe implements Serializable

Class cc.mallet.pipe.TokenSequence2FeatureSequenceWithBigrams extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### biDictionary

    Alphabet biDictionary

Class cc.mallet.pipe.TokenSequence2FeatureVectorSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### augmentable

    boolean augmentable

### binary

    boolean binary

### growAlphabet

    boolean growAlphabet

Class cc.mallet.pipe.TokenSequence2TokenInstances extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.TokenSequenceLowercase extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.pipe.TokenSequenceMatchDataAndTarget extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### regex

    java.util.regex.Pattern regex

### dataGroup

    int dataGroup

### targetGroup

    int targetGroup

Class cc.mallet.pipe.TokenSequenceNGrams extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### gramSizes

    int[] gramSizes

Class cc.mallet.pipe.TokenSequenceParseFeatureString extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### realValued

    boolean realValued

### specifyFeatureNames

    boolean specifyFeatureNames

### nameValueSeparator

    java.lang.String nameValueSeparator

Class cc.mallet.pipe.TokenSequenceRemoveNonAlpha extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### markDeletions

    boolean markDeletions

Class cc.mallet.pipe.TokenSequenceRemoveStopwords extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### stoplist

    java.util.HashSet<E> stoplist

### caseSensitive

    boolean caseSensitive

### markDeletions

    boolean markDeletions

Package cc.mallet.pipe.tests

Class cc.mallet.pipe.tests.TestInstancePipe.Array2ArrayIterator extends Pipe implements Serializable

Class cc.mallet.pipe.tests.TestSGML2TokenSequence.Array2ArrayIterator extends Pipe implements Serializable

Package cc.mallet.pipe.tsf

Class cc.mallet.pipe.tsf.CountMatches extends Pipe implements Serializable

Serialized Fields

### regex

    java.util.regex.Pattern regex

### feature

    java.lang.String feature

### normalizeByCharLength

    boolean normalizeByCharLength

### countIsBinary

    boolean countIsBinary

Class cc.mallet.pipe.tsf.CountMatchesAlignedWithOffsets extends Pipe implements Serializable

Serialized Fields

### regex

    java.util.regex.Pattern regex

### feature

    java.lang.String feature

### offsets

    int[] offsets

### normalizeByMatchCount

    boolean normalizeByMatchCount

Class cc.mallet.pipe.tsf.CountMatchesMatching extends Pipe implements Serializable

Serialized Fields

### feature

    java.lang.String feature

### regex

    java.util.regex.Pattern regex

### moreSpecificRegex

    java.util.regex.Pattern moreSpecificRegex

### normalizeByRegexMatches

    boolean normalizeByRegexMatches

Class cc.mallet.pipe.tsf.FeaturesInWindow extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### namePrefix

    java.lang.String namePrefix

### namePrefixLeft

    java.lang.String namePrefixLeft

### leftBoundary

    int leftBoundary

### rightBoundary

    int rightBoundary

### featureRegex

    java.util.regex.Pattern featureRegex

### includeBeginEndBoundaries

    boolean includeBeginEndBoundaries

### includeCurrentToken

    boolean includeCurrentToken

Class cc.mallet.pipe.tsf.FeaturesOfFirstMention extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### namePrefix

    java.lang.String namePrefix

### firstMentionName

    java.lang.String firstMentionName

### featureRegex

    java.util.regex.Pattern featureRegex

### filterRegex

    java.util.regex.Pattern filterRegex

### includeFiltered

    boolean includeFiltered

Class cc.mallet.pipe.tsf.LexiconMembership extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### name

    java.lang.String name

### lexicon

    gnu.trove.THashSet<E> lexicon

### ignoreCase

    boolean ignoreCase

Class cc.mallet.pipe.tsf.OffsetConjunctions extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### conjunctions

    int[][] conjunctions

### includeOriginalSingletons

    boolean includeOriginalSingletons

### featureRegex

    java.util.regex.Pattern featureRegex

Class cc.mallet.pipe.tsf.OffsetFeatureConjunction extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### thisFeatureName

    java.lang.String thisFeatureName

### featurePatterns

    java.util.regex.Pattern[] featurePatterns

### offsets

    int[] offsets

### isNonNegated

    boolean[] isNonNegated

### tagAllTimesteps

    boolean tagAllTimesteps

Class cc.mallet.pipe.tsf.OffsetPropertyConjunctions extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### conjunctions

    int[][] conjunctions

### includeOriginalSingletons

    boolean includeOriginalSingletons

### propertyKey

    java.lang.String propertyKey

Class cc.mallet.pipe.tsf.RegexMatches extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### regex

    java.util.regex.Pattern regex

### feature

    java.lang.String feature

Class cc.mallet.pipe.tsf.SequencePrintingPipe extends Pipe implements Serializable

Serialized Fields

### writer

    java.io.PrintWriter writer

Class cc.mallet.pipe.tsf.Target2BIOFormat extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### backgroundTag

    java.lang.String backgroundTag

Class cc.mallet.pipe.tsf.TokenFirstPosition extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### featureName

    java.lang.String featureName

Class cc.mallet.pipe.tsf.TokenText extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

### matchingRegex

    java.util.regex.Pattern matchingRegex

Class cc.mallet.pipe.tsf.TokenTextCharNGrams extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

### gramSizes

    int[] gramSizes

### distinguishBorders

    boolean distinguishBorders

Class cc.mallet.pipe.tsf.TokenTextCharPrefix extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

### prefixLength

    int prefixLength

Class cc.mallet.pipe.tsf.TokenTextCharSuffix extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

### suffixLength

    int suffixLength

Class cc.mallet.pipe.tsf.TokenTextNGrams extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prefix

    java.lang.String prefix

### gramSizes

    int[] gramSizes

### distinguishBorders

    boolean distinguishBorders

Class cc.mallet.pipe.tsf.TrieLexiconMembership extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### name

    java.lang.String name

### ignoreCase

    boolean ignoreCase

### lexicon

    cc.mallet.pipe.tsf.TrieLexiconMembership.TrieLexicon lexicon

Package cc.mallet.share.casutton.ner

Class cc.mallet.share.casutton.ner.ConllNer2003Sentence2TokenSequence extends Pipe implements Serializable

serialVersionUID: -7326674871670572522L

Serialized Fields

### saveSource

    boolean saveSource

### doConjunctions

    boolean doConjunctions

### doTags

    boolean doTags

### doPhrases

    boolean doPhrases

### doSpelling

    boolean doSpelling

### doDigitCollapses

    boolean doDigitCollapses

### doDowncasing

    boolean doDowncasing

Package cc.mallet.share.mccallum.ner

Class cc.mallet.share.mccallum.ner.ConllNer2003Sentence2TokenSequence extends Pipe implements Serializable

Serialized Fields

### saveSource

    boolean saveSource

### doConjunctions

    boolean doConjunctions

### doTags

    boolean doTags

### doPhrases

    boolean doPhrases

### doSpelling

    boolean doSpelling

### doDigitCollapses

    boolean doDigitCollapses

### doDowncasing

    boolean doDowncasing

Class cc.mallet.share.mccallum.ner.TokenSequenceDocHeader extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Package cc.mallet.share.upenn.ner

Class cc.mallet.share.upenn.ner.FeatureWindow extends Pipe implements Serializable

Serialized Fields

### left

    int left

### right

    int right

Class cc.mallet.share.upenn.ner.LengthBins extends Pipe implements Serializable

Serialized Fields

### name

    java.lang.String name

### bins

    int[] bins

### binNames

    java.lang.String[] binNames

Class cc.mallet.share.upenn.ner.ListMember extends Pipe implements Serializable

Serialized Fields

### name

    java.lang.String name

### lexicon

    java.util.Set<E> lexicon

### ignoreCase

    boolean ignoreCase

### min

    int min

### max

    int max

Class cc.mallet.share.upenn.ner.LongRegexMatches extends Pipe implements Serializable

Serialized Fields

### name

    java.lang.String name

### regex

    java.util.regex.Pattern regex

### min

    int min

### max

    int max

Class cc.mallet.share.upenn.ner.NEPipes extends SerialPipes implements Serializable

Package cc.mallet.share.weili.ner.enron

Class cc.mallet.share.weili.ner.enron.EnronMessage2TokenSequence extends Pipe implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### saveSource

    boolean saveSource

### headerPersonNames

    java.util.HashSet<E> headerPersonNames

Package cc.mallet.topics

Class cc.mallet.topics.DMRTopicModel extends LDAHyper implements Serializable

serialVersionUID: 1L

Serialized Fields

### dmrParameters

    MaxEnt dmrParameters

### numFeatures

    int numFeatures

### defaultFeatureIndex

    int defaultFeatureIndex

### parameterPipe

    Pipe parameterPipe

### alphaCache

    double[][] alphaCache

### alphaSumCache

    double[] alphaSumCache

Class cc.mallet.topics.LDA extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Deprecated.
  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Deprecated.
  Throws:
    `java.io.IOException`

Serialized Fields

### numTopics

    int numTopics

  Deprecated.

### alpha

    double alpha

  Deprecated.

### beta

    double beta

  Deprecated.

### tAlpha

    double tAlpha

  Deprecated.

### vBeta

    double vBeta

  Deprecated.

### ilist

    InstanceList ilist

  Deprecated.

### topics

    int[][] topics

  Deprecated.

### numTypes

    int numTypes

  Deprecated.

### numTokens

    int numTokens

  Deprecated.

### docTopicCounts

    int[][] docTopicCounts

  Deprecated.

### typeTopicCounts

    int[][] typeTopicCounts

  Deprecated.

### tokensPerTopic

    int[] tokensPerTopic

  Deprecated.

Class cc.mallet.topics.LDAHyper extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Deprecated.
  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Deprecated.
  Throws:
    `java.io.IOException`

Serialized Fields

### data

    java.util.ArrayList<E> data

  Deprecated.

### alphabet

    Alphabet alphabet

  Deprecated.

### topicAlphabet

    LabelAlphabet topicAlphabet

  Deprecated.

### numTopics

    int numTopics

  Deprecated.

### numTypes

    int numTypes

  Deprecated.

### alpha

    double[] alpha

  Deprecated.

### alphaSum

    double alphaSum

  Deprecated.

### beta

    double beta

  Deprecated.

### betaSum

    double betaSum

  Deprecated.

### smoothingOnlyMass

    double smoothingOnlyMass

  Deprecated.

### cachedCoefficients

    double[] cachedCoefficients

  Deprecated.

### topicTermCount

    int topicTermCount

  Deprecated.

### betaTopicCount

    int betaTopicCount

  Deprecated.

### smoothingOnlyCount

    int smoothingOnlyCount

  Deprecated.

### testing

    InstanceList testing

  Deprecated.

### oneDocTopicCounts

    int[] oneDocTopicCounts

  Deprecated.

### typeTopicCounts

    gnu.trove.TIntIntHashMap[] typeTopicCounts

  Deprecated.

### tokensPerTopic

    int[] tokensPerTopic

  Deprecated.

### docLengthCounts

    int[] docLengthCounts

  Deprecated.

### topicDocCounts

    int[][] topicDocCounts

  Deprecated.

### iterationsSoFar

    int iterationsSoFar

  Deprecated.

### numIterations

    int numIterations

  Deprecated.

### burninPeriod

    int burninPeriod

  Deprecated.

### saveSampleInterval

    int saveSampleInterval

  Deprecated.

### optimizeInterval

    int optimizeInterval

  Deprecated.

### showTopicsInterval

    int showTopicsInterval

  Deprecated.

### wordsPerTopic

    int wordsPerTopic

  Deprecated.

### outputModelInterval

    int outputModelInterval

  Deprecated.

### outputModelFilename

    java.lang.String outputModelFilename

  Deprecated.

### saveStateInterval

    int saveStateInterval

  Deprecated.

### stateFilename

    java.lang.String stateFilename

  Deprecated.

### random

    Randoms random

  Deprecated.

### formatter

    java.text.NumberFormat formatter

  Deprecated.

### printLogLikelihood

    boolean printLogLikelihood

  Deprecated.

Class cc.mallet.topics.LDAHyper.Topication extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### instance

    Instance instance

### model

    LDAHyper model

### topicSequence

    LabelSequence topicSequence

### topicDistribution

    Labeling topicDistribution

Class cc.mallet.topics.LDAStream extends LDAHyper implements Serializable

Serialized Fields

### test

    java.util.ArrayList<E> test

Class cc.mallet.topics.MarginalProbEstimator extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### numTopics

    int numTopics

### topicMask

    int topicMask

### topicBits

    int topicBits

### alpha

    double[] alpha

### alphaSum

    double alphaSum

### beta

    double beta

### betaSum

    double betaSum

### smoothingOnlyMass

    double smoothingOnlyMass

### cachedCoefficients

    double[] cachedCoefficients

### typeTopicCounts

    int[][] typeTopicCounts

### tokensPerTopic

    int[] tokensPerTopic

### random

    Randoms random

Class cc.mallet.topics.NPTopicModel extends java.lang.Object implements Serializable

Serialized Fields

### data

    java.util.ArrayList<E> data

### alphabet

    Alphabet alphabet

### topicAlphabet

    LabelAlphabet topicAlphabet

### maxTopic

    int maxTopic

### numTopics

    int numTopics

### numTypes

    int numTypes

### alpha

    double alpha

### gamma

    double gamma

### beta

    double beta

### betaSum

    double betaSum

### typeTopicCounts

    gnu.trove.TIntIntHashMap[] typeTopicCounts

### tokensPerTopic

    gnu.trove.TIntIntHashMap tokensPerTopic

### docsPerTopic

    gnu.trove.TIntIntHashMap docsPerTopic

### totalDocTopics

    int totalDocTopics

### showTopicsInterval

    int showTopicsInterval

### wordsPerTopic

    int wordsPerTopic

### random

    Randoms random

### formatter

    java.text.NumberFormat formatter

### printLogLikelihood

    boolean printLogLikelihood

Class cc.mallet.topics.ParallelTopicModel extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### data

    java.util.ArrayList<E> data

### alphabet

    Alphabet alphabet

### topicAlphabet

    LabelAlphabet topicAlphabet

### numTopics

    int numTopics

### topicMask

    int topicMask

### topicBits

    int topicBits

### numTypes

    int numTypes

### totalTokens

    int totalTokens

### alpha

    double[] alpha

### alphaSum

    double alphaSum

### beta

    double beta

### betaSum

    double betaSum

### usingSymmetricAlpha

    boolean usingSymmetricAlpha

### typeTopicCounts

    int[][] typeTopicCounts

### tokensPerTopic

    int[] tokensPerTopic

### docLengthCounts

    int[] docLengthCounts

### topicDocCounts

    int[][] topicDocCounts

### numIterations

    int numIterations

### burninPeriod

    int burninPeriod

### saveSampleInterval

    int saveSampleInterval

### optimizeInterval

    int optimizeInterval

### temperingInterval

    int temperingInterval

### showTopicsInterval

    int showTopicsInterval

### wordsPerTopic

    int wordsPerTopic

### saveStateInterval

    int saveStateInterval

### stateFilename

    java.lang.String stateFilename

### saveModelInterval

    int saveModelInterval

### modelFilename

    java.lang.String modelFilename

### randomSeed

    int randomSeed

### formatter

    java.text.NumberFormat formatter

### printLogLikelihood

    boolean printLogLikelihood

### typeTotals

    int[] typeTotals

### maxTypeCount

    int maxTypeCount

### numThreads

    int numThreads

Class cc.mallet.topics.PolylingualTopicModel extends java.lang.Object implements Serializable

Serialized Fields

### numLanguages

    int numLanguages

### data

    java.util.ArrayList<E> data

### topicAlphabet

    LabelAlphabet topicAlphabet

### numStopwords

    int numStopwords

### numTopics

    int numTopics

### testingIDs

    java.util.HashSet<E> testingIDs

### topicMask

    int topicMask

### topicBits

    int topicBits

### alphabets

    Alphabet[] alphabets

### vocabularySizes

    int[] vocabularySizes

### alpha

    double[] alpha

### alphaSum

    double alphaSum

### betas

    double[] betas

### betaSums

    double[] betaSums

### languageMaxTypeCounts

    int[] languageMaxTypeCounts

### languageSmoothingOnlyMasses

    double[] languageSmoothingOnlyMasses

### languageCachedCoefficients

    double[][] languageCachedCoefficients

### topicTermCount

    int topicTermCount

### betaTopicCount

    int betaTopicCount

### smoothingOnlyCount

    int smoothingOnlyCount

### oneDocTopicCounts

    int[] oneDocTopicCounts

### languageTypeTopicCounts

    int[][][] languageTypeTopicCounts

### languageTokensPerTopic

    int[][] languageTokensPerTopic

### docLengthCounts

    int[] docLengthCounts

### topicDocCounts

    int[][] topicDocCounts

### iterationsSoFar

    int iterationsSoFar

### numIterations

    int numIterations

### burninPeriod

    int burninPeriod

### saveSampleInterval

    int saveSampleInterval

### optimizeInterval

    int optimizeInterval

### showTopicsInterval

    int showTopicsInterval

### wordsPerTopic

    int wordsPerTopic

### outputModelInterval

    int outputModelInterval

### outputModelFilename

    java.lang.String outputModelFilename

### saveStateInterval

    int saveStateInterval

### stateFilename

    java.lang.String stateFilename

### random

    Randoms random

### formatter

    java.text.NumberFormat formatter

### printLogLikelihood

    boolean printLogLikelihood

Class cc.mallet.topics.PolylingualTopicModel.TopicAssignment extends java.lang.Object implements Serializable

Serialized Fields

### instances

    Instance[] instances

### topicSequences

    LabelSequence[] topicSequences

### topicDistribution

    Labeling topicDistribution

Class cc.mallet.topics.SimpleLDA extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### data

    java.util.ArrayList<E> data

### alphabet

    Alphabet alphabet

### topicAlphabet

    LabelAlphabet topicAlphabet

### numTopics

    int numTopics

### numTypes

    int numTypes

### alpha

    double alpha

### alphaSum

    double alphaSum

### beta

    double beta

### betaSum

    double betaSum

### oneDocTopicCounts

    int[] oneDocTopicCounts

### typeTopicCounts

    int[][] typeTopicCounts

### tokensPerTopic

    int[] tokensPerTopic

### showTopicsInterval

    int showTopicsInterval

### wordsPerTopic

    int wordsPerTopic

### random

    Randoms random

### formatter

    java.text.NumberFormat formatter

### printLogLikelihood

    boolean printLogLikelihood

Class cc.mallet.topics.TopicAssignment extends java.lang.Object implements Serializable

Serialized Fields

### instance

    Instance instance

### topicSequence

    LabelSequence topicSequence

### topicDistribution

    Labeling topicDistribution

Class cc.mallet.topics.TopicInferencer extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### numTopics

    int numTopics

### topicMask

    int topicMask

### topicBits

    int topicBits

### numTypes

    int numTypes

### alpha

    double[] alpha

### beta

    double beta

### betaSum

    double betaSum

### typeTopicCounts

    int[][] typeTopicCounts

### tokensPerTopic

    int[] tokensPerTopic

### alphabet

    Alphabet alphabet

### random

    Randoms random

### smoothingOnlyMass

    double smoothingOnlyMass

### cachedCoefficients

    double[] cachedCoefficients

Package cc.mallet.topics.tui

Class cc.mallet.topics.tui.DMRLoader extends java.lang.Object implements Serializable

serialVersionUID: 1L

Package cc.mallet.types

Class cc.mallet.types.Alphabet extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

### readResolve

    public java.lang.Object readResolve()
                                 throws java.io.ObjectStreamException

  This gets called after readObject; it lets the object decide whether to return itself or return a previously read in version. We use a hashMap of instanceIds to determine if we have already read in this object.

  Throws:
    `java.io.ObjectStreamException`

Serialized Fields

### map

    gnu.trove.TObjectIntHashMap<K> map

### entries

    java.util.ArrayList<E> entries

### growthStopped

    boolean growthStopped

### entryClass

    java.lang.Class<T> entryClass

### instanceId

    java.rmi.dgc.VMID instanceId

Class cc.mallet.types.ArrayListSequence extends java.util.ArrayList<E> implements Serializable

serialVersionUID: 1L

Class cc.mallet.types.AugmentableFeatureVector extends FeatureVector implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### size

    int size

### maxSortedIndex

    int maxSortedIndex

Class cc.mallet.types.CrossValidationIterator extends java.lang.Object implements Serializable

serialVersionUID: 234516468015114991L

Serialized Fields

### nfolds

    int nfolds

### folds

    InstanceList[] folds

### index

    int index

Class cc.mallet.types.DenseMatrix extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### values

    double[] values

### hasInfinite

    boolean hasInfinite

Class cc.mallet.types.DenseVector extends DenseMatrix implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.types.ExpGain extends RankedFeatureVector implements Serializable

Serialized Fields

### usingHyperbolicPrior

    boolean usingHyperbolicPrior

### hyperbolicSlope

    double hyperbolicSlope

### hyperbolicSharpness

    double hyperbolicSharpness

Class cc.mallet.types.FeatureConjunction extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### name

    java.lang.String name

### dictionary

    Alphabet dictionary

### features

    int[] features

### negations

    boolean[] negations

### index

    int index

Class cc.mallet.types.FeatureConjunction.List extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### conjunctions

    java.util.ArrayList<E> conjunctions

Class cc.mallet.types.FeatureCounts extends RankedFeatureVector implements Serializable

Class cc.mallet.types.FeatureInducer extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### ranker

    RankedFeatureVector.Factory ranker

### perLabelRanker

    RankedFeatureVector.PerLabelFactory perLabelRanker

### beam1

    int beam1

### beam2

    int beam2

### fcl

    FeatureConjunction.List fcl

Class cc.mallet.types.FeatureSelection extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### dictionary

    Alphabet dictionary

### selectedFeatures

    java.util.BitSet selectedFeatures

Class cc.mallet.types.FeatureSequence extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### dictionary

    Alphabet dictionary

### features

    int[] features

### length

    int length

Class cc.mallet.types.FeatureSequenceWithBigrams extends FeatureSequence implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### biDictionary

    Alphabet biDictionary

### biFeatures

    int[] biFeatures

Class cc.mallet.types.FeatureVector extends SparseVector implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### dictionary

    Alphabet dictionary

Class cc.mallet.types.FeatureVectorSequence extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### sequence

    FeatureVector[] sequence

### alphabet

    Alphabet alphabet

Class cc.mallet.types.GainRatio extends RankedFeatureVector implements Serializable

serialVersionUID: 1L

Serialized Fields

### m_splitPoints

    double[] m_splitPoints

### m_baseEntropy

    double m_baseEntropy

### m_baseLabelDistribution

    LabelVector m_baseLabelDistribution

### m_numSplitPointsForBestFeature

    int m_numSplitPointsForBestFeature

### m_minNumInsts

    int m_minNumInsts

Class cc.mallet.types.GradientGain extends RankedFeatureVector implements Serializable

Class cc.mallet.types.HashedSparseVector extends SparseVector implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### index2location

    gnu.trove.TIntIntHashMap index2location

### maxIndex

    int maxIndex

Class cc.mallet.types.IndexedSparseVector extends SparseVector implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.types.InfoGain extends RankedFeatureVector implements Serializable

Serialized Fields

### baseEntropy

    double baseEntropy

### baseLabelDistribution

    LabelVector baseLabelDistribution

Class cc.mallet.types.Instance extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### data

    java.lang.Object data

### target

    java.lang.Object target

### name

    java.lang.Object name

### source

    java.lang.Object source

### properties

    PropertyList properties

### locked

    boolean locked

Class cc.mallet.types.InstanceList extends java.util.ArrayList<Instance> implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### instWeights

    java.util.HashMap<K,V> instWeights

### featureSelection

    FeatureSelection featureSelection

### perLabelFeatureSelection

    FeatureSelection[] perLabelFeatureSelection

### pipe

    Pipe pipe

### dataAlphabet

    Alphabet dataAlphabet

### targetAlphabet

    Alphabet targetAlphabet

### dataClass

    java.lang.Class<T> dataClass

### targetClass

    java.lang.Class<T> targetClass

Class cc.mallet.types.InstanceList.CrossValidationIterator extends java.lang.Object implements Serializable

Serialized Fields

### nfolds

    int nfolds

### folds

    InstanceList[] folds

### index

    int index

Class cc.mallet.types.KLGain extends RankedFeatureVector implements Serializable

Class cc.mallet.types.Label extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### entry

    java.lang.Object entry

### dictionary

    LabelAlphabet dictionary

### index

    int index

Class cc.mallet.types.LabelAlphabet extends Alphabet implements Serializable

Serialized Fields

### labels

    java.util.ArrayList<E> labels

Class cc.mallet.types.Labels extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### labels

    Label[] labels

Class cc.mallet.types.LabelSequence extends FeatureSequence implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.types.LabelsSequence extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### seq

    Labels[] seq

Class cc.mallet.types.LabelVector extends RankedFeatureVector implements Serializable

Class cc.mallet.types.Matrix2 extends DenseMatrix implements Serializable

Serialized Fields

### nr

    int nr

  Deprecated.

### nc

    int nc

  Deprecated.

Class cc.mallet.types.Matrixn extends DenseMatrix implements Serializable

serialVersionUID: 7963668115823191655L

Serialized Fields

### numDimensions

    int numDimensions

### sizes

    int[] sizes

Class cc.mallet.types.MultiInstanceList extends InstanceList implements Serializable

serialVersionUID: -7177121200386974657L

Serialized Fields

### lists

    InstanceList[] lists

### offsets

    int[] offsets

Class cc.mallet.types.Multinomial extends FeatureVector implements Serializable

serialVersionUID: 1L

Class cc.mallet.types.Multinomial.Estimator extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### dictionary

    Alphabet dictionary

### counts

    double[] counts

### size

    int size

Class cc.mallet.types.Multinomial.LaplaceEstimator extends Multinomial.MEstimator implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.types.Multinomial.Logged extends Multinomial implements Serializable

serialVersionUID: 1L

Class cc.mallet.types.Multinomial.MAPEstimator extends Multinomial.Estimator implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### prior

    Dirichlet prior

Class cc.mallet.types.Multinomial.MEstimator extends Multinomial.Estimator implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### m

    double m

Class cc.mallet.types.Multinomial.MLEstimator extends Multinomial.MEstimator implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Class cc.mallet.types.PagedInstanceList extends InstanceList implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### instancesPerPage

    int instancesPerPage

  number of instances to put in one page

### swapDir

    java.io.File swapDir

  directory to store swap files

### inMemoryPageIds

    int[] inMemoryPageIds

  array of page numbers that represent the in-memory pages

### inMemoryPages

    InstanceList[] inMemoryPages

  array of instance lists that represent the in-memory pages

### dirty

    java.util.BitSet dirty

  dirty.get(i) == true if in-memory bin i is dirty

### size

    int size

  Total number of instances in list, including those swapped out

### collectGarbage

    boolean collectGarbage

  recommend garbage collection after every swap out?

### swapIns

    int swapIns

  Total number of swap-ins

### swapInTime

    long swapInTime

  Total time spent in swap-ins

### swapOuts

    int swapOuts

  Total number of swap-outs

### swapOutTime

    long swapOutTime

  Total time spent in swap-ins

### id

    java.rmi.dgc.VMID id

  uniquely identifies this InstanceList. Used in creating serialized page name for swap files.

### noopPipe

    Pipe noopPipe

  Avoids creating a new noop pipe for each page

Class cc.mallet.types.PartiallyRankedFeatureVector extends RankedFeatureVector implements Serializable

Serialized Fields

### numRanked

    int numRanked

Class cc.mallet.types.RankedFeatureVector extends FeatureVector implements Serializable

Serialized Fields

### rankOrder

    int[] rankOrder

### sortedTo

    int sortedTo

Class cc.mallet.types.ROCData extends java.lang.Object implements Serializable

serialVersionUID: -2060194953037720640L

Serialized Fields

### labelAlphabet

    LabelAlphabet labelAlphabet

### counts

    int[][][] counts

  Matrix of class, threshold, [tp, fp, fn, tn]

### thresholds

    double[] thresholds

Class cc.mallet.types.SparseMatrixn extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### values

    SparseVector values

### numDimensions

    int numDimensions

### sizes

    int[] sizes

### singleSize

    int singleSize

Class cc.mallet.types.SparseVector extends java.lang.Object implements Serializable

serialVersionUID: 2L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### indices

    int[] indices

  If the vector is sparse, then both indices and values are sparse. Indices into these arrays are called ``locations'' in the below. The indices[] array maps locations to indices of the (virtual) dense array that's being represented. value[] maps locations to values.

### values

    double[] values

### hasInfinite

    boolean hasInfinite

Class cc.mallet.types.StringEditFeatureVectorSequence extends FeatureVectorSequence implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### string1Length

    int string1Length

### string2Length

    int string2Length

### string1

    java.lang.String string1

### string2

    java.lang.String string2

### string1Blocks

    java.lang.String[] string1Blocks

### string2Blocks

    java.lang.String[] string2Blocks

### string1Present

    gnu.trove.TObjectIntHashMap<K> string1Present

### string2Present

    gnu.trove.TObjectIntHashMap<K> string2Present

### lexicon

    gnu.trove.TObjectIntHashMap<K> lexicon

### block1Indices

    int[] block1Indices

### block2Indices

    int[] block2Indices

### delim

    char delim

Class cc.mallet.types.StringEditVector extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### _delimiter

    java.lang.String _delimiter

### _string1

    java.lang.String _string1

### _string2

    java.lang.String _string2

### _match

    int _match

Class cc.mallet.types.StringKernel extends java.util.LinkedHashMap implements Serializable

Serialized Fields

### normalizeCase

    boolean normalizeCase

### lambda

    double lambda

### n

    int n

### cache

    boolean cache

Class cc.mallet.types.Token extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### text

    java.lang.String text

### properties

    PropertyList properties

### features

    PropertyList features

Class cc.mallet.types.TokenSequence extends java.util.ArrayList<Token> implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### properties

    PropertyList properties

Package cc.mallet.util

Class cc.mallet.util.CharSequenceLexer extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### regex

    java.util.regex.Pattern regex

### matcher

    java.util.regex.Matcher matcher

### input

    java.lang.CharSequence input

### matchText

    java.lang.String matchText

### matchTextFresh

    boolean matchTextFresh

Class cc.mallet.util.DoubleList extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### data

    double[] data

### size

    int size

Class cc.mallet.util.ProgressMessageLogRecord extends java.util.logging.LogRecord implements Serializable

Class cc.mallet.util.PropertyList extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### next

    PropertyList next

### key

    java.lang.String key

Class cc.mallet.util.PropertyList.Iterator extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialization Methods

### readObject

    private void readObject(java.io.ObjectInputStream in)
                     throws java.io.IOException,
                            java.lang.ClassNotFoundException

  Throws:
    `java.io.IOException`
    `java.lang.ClassNotFoundException`

### writeObject

    private void writeObject(java.io.ObjectOutputStream out)
                      throws java.io.IOException

  Throws:
    `java.io.IOException`

Serialized Fields

### property

    PropertyList property

### nextProperty

    PropertyList nextProperty

### deletedKeys

    java.util.HashSet<E> deletedKeys

### nextCalled

    boolean nextCalled

### returnNumeric

    boolean returnNumeric

### returnObject

    boolean returnObject

Class cc.mallet.util.PropertyList.NumericIterator extends PropertyList.Iterator implements Serializable

Class cc.mallet.util.PropertyList.ObjectIterator extends PropertyList.Iterator implements Serializable

Class cc.mallet.util.Randoms extends java.util.Random implements Serializable

Serialized Fields

### nextGaussian

    double nextGaussian

### haveNextGaussian

    boolean haveNextGaussian

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