Uses of Interface
cc.mallet.grmm.types.VarSet

Packages that use VarSet

cc.mallet.grmm.inference
cc.mallet.grmm.inference.gbp
cc.mallet.grmm.learning
cc.mallet.grmm.types
cc.mallet.grmm.util

Uses of VarSet in cc.mallet.grmm.inference

Methods in cc.mallet.grmm.inference that return VarSet

static VarSet	Utils.defaultIntersection(VarSet v1, VarSet v2)
VarSet	JunctionTree.findCluster(Variable[] vars) Returns a cluster in the tree that contains exactly the given variables, or null if no such cluster exists.
VarSet	JunctionTree.findParentCluster(java.util.Collection vars) Returns a cluster in the tree that contains all the vars in a collection.
VarSet	JunctionTree.findParentCluster(Variable var) Returns a cluster in the tree that contains var.

Methods in cc.mallet.grmm.inference with parameters of type VarSet

static VarSet	Utils.defaultIntersection(VarSet v1, VarSet v2)
Factor	JunctionTree.getCPF(VarSet c)
java.util.Set	JunctionTree.getSepset(VarSet v1, VarSet v2)
Factor	JunctionTree.getSepsetPot(VarSet v1, VarSet v2)
Factor	SamplingInferencer.lookupMarginal(VarSet varSet)
Factor	JunctionTreeInferencer.lookupMarginal(VarSet varSet)
Factor	Inferencer.lookupMarginal(VarSet varSet) Returns the computed marginal of a given clique in a graph.
Factor	BruteForceInferencer.lookupMarginal(VarSet c)
Factor	AbstractInferencer.lookupMarginal(VarSet c)
Factor	AbstractBeliefPropagation.lookupMarginal(VarSet c)
Factor	RandomGraphs.FactorGenerator.nextFactor(VarSet vars)
Factor	RandomGraphs.UniformFactorGenerator.nextFactor(VarSet vars)
void	JunctionTree.setCPF(VarSet c, Factor pot)

Uses of VarSet in cc.mallet.grmm.inference.gbp

Methods in cc.mallet.grmm.inference.gbp with parameters of type VarSet

Factor

ParentChildGBP.lookupMarginal(VarSet varSet)

Uses of VarSet in cc.mallet.grmm.learning

Classes in cc.mallet.grmm.learning that implement VarSet

static class

ACRF.UnrolledVarSet A clique in the unrolled graphical model (an instantiation of some Template).

Methods in cc.mallet.grmm.learning with parameters of type VarSet

protected Assignment	ACRF.Template.computeAssignment(Assignment graphAssn, VarSet vs)
int	ACRF.UnrolledGraph.getIndex(VarSet vs)

Uses of VarSet in cc.mallet.grmm.types

Classes in cc.mallet.grmm.types that implement VarSet

class	BitVarSet A clique that uses very little time and memory based on the flyweight pattern.
class	HashVarSet A clique is a collection of nodes in a graph that are all adjacent.
class	ListVarSet A clique that uses very little time and memory based on the flyweight pattern, in the same way as BitVarSet.
class	UnmodifiableVarSet Created: Dec 15, 2005

Fields in cc.mallet.grmm.types declared as VarSet

protected VarSet

AbstractFactor.vars

Methods in cc.mallet.grmm.types that return VarSet

VarSet	FactorGraph.getAdjacentVertices(Variable var) Returns all variables that are adjacent to a given variable in this graph---that is, the set of all variables that share a factor with this one.
VarSet	CPT.getParents()
VarSet	VarSet.intersection(VarSet c) Returns the intersection of two cliques.
VarSet	UnmodifiableVarSet.intersection(VarSet c)
VarSet	ListVarSet.intersection(VarSet c)
VarSet	HashVarSet.intersection(VarSet c) Returns the intersection of two cliques.
VarSet	BitVarSet.intersection(VarSet c)
VarSet	FactorGraph.varSet()
VarSet	Factor.varSet() Returns set of variables in this potential.
VarSet	CPT.varSet()
VarSet	AbstractTableFactor.varSet() Returns set of variables in this potential.
VarSet	AbstractFactor.varSet()

Methods in cc.mallet.grmm.types with parameters of type VarSet

protected Factor	UniNormalFactor.extractMaxInternal(VarSet varSet)
protected Factor	UniformFactor.extractMaxInternal(VarSet varSet)
protected Factor	SkeletonFactor.extractMaxInternal(VarSet varSet)
protected Factor	PottsTableFactor.extractMaxInternal(VarSet varSet)
protected Factor	NormalFactor.extractMaxInternal(VarSet varSet)
protected Factor	ConstantFactor.extractMaxInternal(VarSet varSet)
protected Factor	BinaryUnaryFactor.extractMaxInternal(VarSet varSet)
protected Factor	BetaFactor.extractMaxInternal(VarSet varSet)
protected Factor	Assignment.extractMaxInternal(VarSet varSet)
protected abstract Factor	AbstractFactor.extractMaxInternal(VarSet varSet)
Factor	FactorGraph.factorOf(VarSet varSet) Returns the factor in this graph, if any, whose domain is a given clique.
VarSet	VarSet.intersection(VarSet c) Returns the intersection of two cliques.
VarSet	UnmodifiableVarSet.intersection(VarSet c)
VarSet	ListVarSet.intersection(VarSet c)
VarSet	HashVarSet.intersection(VarSet c) Returns the intersection of two cliques.
VarSet	BitVarSet.intersection(VarSet c)
gnu.trove.TIntObjectHashMap	Universe.lookupProjectionCache(VarSet varSet)
static TableFactor	TableFactor.makeFromLogValues(VarSet domain, double[] vals)
static Assignment	Assignment.makeFromSingleIndex(VarSet clique, int idx)
protected Factor	UniNormalFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	UniformFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	SkeletonFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	PottsTableFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	NormalFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	ConstantFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	BinaryUnaryFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	BetaFactor.marginalizeInternal(VarSet varsToKeep)
protected Factor	Assignment.marginalizeInternal(VarSet varsToKeep)
protected abstract Factor	AbstractFactor.marginalizeInternal(VarSet varsToKeep)
Factor	FactorGraph.marginalizeOut(VarSet varset)
Factor	Factor.marginalizeOut(VarSet varset) Returns the marginal distribution attained by summing out the given set of variables.
Factor	CPT.marginalizeOut(VarSet varset)
Factor	AbstractTableFactor.marginalizeOut(VarSet badVars)
Factor	AbstractFactor.marginalizeOut(VarSet varset)
static Assignment	Assignment.restriction(Assignment assn, VarSet varSet) Deprecated. marginalize
protected void	AbstractFactor.setVarSet(VarSet vars)

Constructors in cc.mallet.grmm.types with parameters of type VarSet

AbstractFactor(VarSet vars)

AbstractTableFactor(VarSet allVars, double[] probs)
Creates a potential with the given variables and the given probabilities.

AbstractTableFactor(VarSet allVars, Matrix probsIn)
Creates a potential with the given variables and the given probabilities.

BitVarSet(VarSet vsOld)

ListVarSet(VarSet vsOld)

NormalFactor(VarSet vars, no.uib.cipr.matrix.Vector mean, no.uib.cipr.matrix.Matrix variance)

PottsTableFactor(VarSet xs, Variable alpha)

TableFactor(VarSet allVars, double[] probs)

TableFactor(VarSet allVars, Matrix probsIn)

UnmodifiableVarSet(VarSet subVarSet)

Uses of VarSet in cc.mallet.grmm.util

Methods in cc.mallet.grmm.util with parameters of type VarSet

static Assignment

ModelReader.readFromMatrix(VarSet vars, java.io.Reader in)